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SEMA6A semaphorin 6A [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101040502, updated on 8-Mar-2024

Summary

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Gene symbol
SEMA6A
Gene description
semaphorin 6A
See related
EnsemblRapid:ENSSBOG00000031739
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100917.1 (108158564..108291981, complement)

NW_024100917.1Genomic Context describing neighboring genes Neighboring gene ADP ribosylation factor like GTPase 14 effector protein like Neighboring gene COMM domain containing 10 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC120365308 Neighboring gene uncharacterized LOC104651548 Neighboring gene elongation factor 1-delta-like Neighboring gene PHD finger-like domain-containing protein 5A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100917 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-6A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100917.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    108158564..108291981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039467787.1 → XP_039323721.1  semaphorin-6A isoform X3

    UniProtKB/TrEMBL
    A0A2K6UH33, A0A2K6UH70
    Related
    ENSSBOP00000031234.2, ENSSBOT00000048122.2
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    pfam01437
    Location:514 → 544
    PSI; Plexin repeat

  2. XM_010339603.2 → XP_010337905.1  semaphorin-6A isoform X2

    UniProtKB/TrEMBL
    A0A2K6UH31, A0A2K6UH79
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat

  3. XM_003920675.3 → XP_003920724.1  semaphorin-6A isoform X1

    UniProtKB/TrEMBL
    A0A2K6UH04, A0A2K6UH79
    Related
    ENSSBOP00000031237.2, ENSSBOT00000048125.2
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
Nucleotide Protein
Heading Accession and Version

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