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FANCM FA complementation group M [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101028397, updated on 8-Mar-2024

Summary

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Gene symbol
FANCM
Gene description
FA complementation group M
See related
EnsemblRapid:ENSSBOG00000030882
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100921.1 (5162209..5237698)

NW_024100921.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD127 Neighboring gene pre-mRNA processing factor 39 Neighboring gene anaphase-promoting complex subunit 15-like Neighboring gene FKBP prolyl isomerase 3 Neighboring gene U1 spliceosomal RNA Neighboring gene MIS18 binding protein 1 Neighboring gene acyl-CoA dehydrogenase family member 11-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100921 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via synthesis-dependent strand annealing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication fork reversal IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Fanconi anemia group M protein
Names
Fanconi anemia complementation group M

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100921.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    5162209..5237698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003930560.3 → XP_003930609.1  Fanconi anemia group M protein isoform X2

    UniProtKB/TrEMBL
    A0A2K6UB15
    Related
    ENSSBOP00000029075.1, ENSSBOT00000045956.2
    Conserved Domains (7) summary
    COG1111
    Location:83 → 580
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd00046
    Location:106 → 222
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd12091
    Location:272 → 387
    FANCM_ID; Insert domain of FANCM and related proteins
    pfam00271
    Location:444 → 551
    Helicase_C; Helicase conserved C-terminal domain
    pfam02732
    Location:1814 → 1921
    ERCC4; ERCC4 domain
    pfam09444
    Location:1480 → 1560
    MRC1; MRC1-like domain
    pfam16783
    Location:647 → 761
    FANCM-MHF_bd; FANCM to MHF binding domain

  2. XM_003930559.3 → XP_003930608.1  Fanconi anemia group M protein isoform X1

    UniProtKB/TrEMBL
    A0A2K6UAY9
    Related
    ENSSBOP00000029071.1, ENSSBOT00000045952.2
    Conserved Domains (7) summary
    COG1111
    Location:83 → 606
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd00046
    Location:106 → 248
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd12091
    Location:298 → 413
    FANCM_ID; Insert domain of FANCM and related proteins
    pfam00271
    Location:470 → 577
    Helicase_C; Helicase conserved C-terminal domain
    pfam02732
    Location:1840 → 1947
    ERCC4; ERCC4 domain
    pfam09444
    Location:1506 → 1586
    MRC1; MRC1-like domain
    pfam16783
    Location:673 → 787
    FANCM-MHF_bd; FANCM to MHF binding domain
Nucleotide Protein
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