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PDLIM1 PDZ and LIM domain 1 [ Papio anubis (olive baboon) ]

Gene ID: 101024712, updated on 8-Mar-2024

Summary

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Gene symbol
PDLIM1
Gene description
PDZ and LIM domain 1
See related
Ensembl:ENSPANG00000021477
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 11 NC_044986.1 (38372286..38426351)
103 previous assembly Panu_3.0 (GCF_000264685.3) 9 NC_018160.2 (87458513..87512600, complement)

Chromosome 11 - NC_044986.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S3a pseudogene Neighboring gene sorbin and SH3 domain containing 1 Neighboring gene uncharacterized LOC108580430 Neighboring gene histone H3.3-like Neighboring gene cytochrome P450 family 2 subfamily C member 76

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ and LIM domain protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044986.1 Reference Panubis1.0 Primary Assembly

    Range
    38372286..38426351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003904034.4 → XP_003904083.1  PDZ and LIM domain protein 1

    See identical proteins and their annotated locations for XP_003904083.1

    UniProtKB/TrEMBL
    A0A096P5Q9
    Related
    ENSPANP00000020684.1, ENSPANT00000010741.3
    Conserved Domains (3) summary
    cd09448
    Location:261 → 312
    LIM_CLP36; This family represents the LIM domain of CLP36
    cd00992
    Location:5 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:139 → 232
    DUF4749; Domain of unknown function (DUF4749)
Nucleotide Protein
Heading Accession and Version

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