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TIGD6 tigger transposable element derived 6 [ Papio anubis (olive baboon) ]

Gene ID: 101009527, updated on 8-Mar-2024

Summary

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Gene symbol
TIGD6
Gene description
tigger transposable element derived 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human all
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 5 NC_044980.1 (142752842..142759148, complement)
103 previous assembly Panu_3.0 (GCF_000264685.3) 6 NC_018157.2 (144389356..144395660, complement)

Chromosome 5 - NC_044980.1Genomic Context describing neighboring genes Neighboring gene PPARG coactivator 1 beta Neighboring gene phosphodiesterase 6A Neighboring gene solute carrier family 26 member 2 Neighboring gene 40S ribosomal protein S20 pseudogene Neighboring gene HMG-box containing 3 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tigger transposable element-derived protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044980.1 Reference Panubis1.0 Primary Assembly

    Range
    142752842..142759148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003900355.4 → XP_003900404.1  tigger transposable element-derived protein 6

    See identical proteins and their annotated locations for XP_003900404.1

    UniProtKB/TrEMBL
    A0A096NB07
    Conserved Domains (3) summary
    pfam03221
    Location:75 → 134
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:7 → 58
    HTH; Helix-turn-helix domains
    cl21549
    Location:207 → 372
    rve; Integrase core domain

  2. XM_009209379.3 → XP_009207643.1  tigger transposable element-derived protein 6

    See identical proteins and their annotated locations for XP_009207643.1

    UniProtKB/TrEMBL
    A0A096NB07
    Conserved Domains (3) summary
    pfam03221
    Location:75 → 134
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:7 → 58
    HTH; Helix-turn-helix domains
    cl21549
    Location:207 → 372
    rve; Integrase core domain
Nucleotide Protein
Heading Accession and Version

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