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MSR1 macrophage scavenger receptor 1 [ Papio anubis (olive baboon) ]

Gene ID: 101002127, updated on 8-Mar-2024

Summary

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Gene symbol
MSR1
Gene description
macrophage scavenger receptor 1
See related
Ensembl:ENSPANG00000016307
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 8 NC_044983.1 (14201137..14286330, complement)
103 previous assembly Panu_3.0 (GCF_000264685.3) 8 NC_018159.2 (14108743..14193890, complement)

Chromosome 8 - NC_044983.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L32 pseudogene Neighboring gene uncharacterized LOC103886653 Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial-like Neighboring gene uncharacterized LOC110743912

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in receptor-mediated endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
macrophage scavenger receptor types I and II

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044983.1 Reference Panubis1.0 Primary Assembly

    Range
    14201137..14286330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009212558.3 → XP_009210822.2  macrophage scavenger receptor types I and II isoform X2

    UniProtKB/TrEMBL
    A0A2I3LI88
    Conserved Domains (4) summary
    pfam01391
    Location:304 → 358
    Collagen; Collagen triple helix repeat (20 copies)
    smart00202
    Location:374 → 474
    SR; Scavenger receptor Cys-rich
    pfam03523
    Location:145 → 193
    Macscav_rec; Macrophage scavenger receptor
    pfam13166
    Location:128 → 293
    AAA_13; AAA domain

  2. XM_009212557.3 → XP_009210821.2  macrophage scavenger receptor types I and II isoform X1

    UniProtKB/TrEMBL
    A0A096NFA9, A0A2I3LI88
    Related
    ENSPANP00000011602.2, ENSPANT00000023435.3
    Conserved Domains (4) summary
    pfam01391
    Location:312 → 366
    Collagen; Collagen triple helix repeat (20 copies)
    smart00202
    Location:382 → 482
    SR; Scavenger receptor Cys-rich
    pfam03523
    Location:153 → 201
    Macscav_rec; Macrophage scavenger receptor
    pfam13166
    Location:136 → 301
    AAA_13; AAA domain

  3. XM_003902456.4 → XP_003902505.1  macrophage scavenger receptor types I and II isoform X4

    See identical proteins and their annotated locations for XP_003902505.1

    UniProtKB/TrEMBL
    A0A2I3LSN4
    Conserved Domains (5) summary
    pfam01391
    Location:280 → 334
    Collagen; Collagen triple helix repeat (20 copies)
    smart00202
    Location:350 → 450
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:355 → 450
    SRCR; Scavenger receptor cysteine-rich domain
    pfam03523
    Location:121 → 169
    Macscav_rec; Macrophage scavenger receptor
    pfam05615
    Location:149 → 249
    THOC7; Tho complex subunit 7

  4. XM_021942022.2 → XP_021797714.1  macrophage scavenger receptor types I and II isoform X3

    UniProtKB/TrEMBL
    A0A2I3LI88
    Conserved Domains (4) summary
    pfam01391
    Location:296 → 350
    Collagen; Collagen triple helix repeat (20 copies)
    smart00202
    Location:366 → 466
    SR; Scavenger receptor Cys-rich
    pfam03523
    Location:137 → 185
    Macscav_rec; Macrophage scavenger receptor
    cl26252
    Location:120 → 285
    AAA_13; AAA domain

  5. XM_003902457.3 → XP_003902506.1  macrophage scavenger receptor types I and II isoform X6

    UniProtKB/TrEMBL
    A0A2I3LSN4, A0A8I5N5H1
    Related
    ENSPANP00000052191.1, ENSPANT00000077873.1
    Conserved Domains (2) summary
    pfam01391
    Location:280 → 334
    Collagen; Collagen triple helix repeat (20 copies)
    pfam03523
    Location:121 → 169
    Macscav_rec; Macrophage scavenger receptor

  6. XM_009212561.4 → XP_009210825.2  macrophage scavenger receptor types I and II isoform X5

    UniProtKB/TrEMBL
    A0A2I3LSN4
    Conserved Domains (3) summary
    pfam01391
    Location:312 → 366
    Collagen; Collagen triple helix repeat (20 copies)
    pfam03523
    Location:153 → 201
    Macscav_rec; Macrophage scavenger receptor
    pfam13166
    Location:136 → 301
    AAA_13; AAA domain
Nucleotide Protein
Heading Accession and Version

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