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TRMT2B tRNA methyltransferase 2 homolog B [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100989771, updated on 8-Mar-2024

Summary

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Gene symbol
TRMT2B
Gene description
tRNA methyltransferase 2 homolog B
See related
Ensembl:ENSPPAG00000038826
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TRMT2B in Genome Data Viewer
Location:
chromosome: X
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) X NC_073272.2 (100607508..100650697, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) X NC_073272.1 (100611112..100654304, complement)

Chromosome X - NC_073272.2Genomic Context describing neighboring genes Neighboring gene XK related X-linked Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 2-like Neighboring gene ADP ribosylation factor like GTPase 13A Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC134729818 Neighboring gene transmembrane protein 35A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (uracil(54)-C5)-methyltransferase activity, S-adenosyl methionine-dependent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (uracil-5-)-methyltransferase homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073272.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    100607508..100650697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008962748.4 → XP_008960996.1  tRNA (uracil-5-)-methyltransferase homolog B isoform X1

    See identical proteins and their annotated locations for XP_008960996.1

    UniProtKB/TrEMBL
    A0A2R9BQZ0
    Related
    ENSPPAP00000031845.1
    Conserved Domains (2) summary
    COG2265
    Location:94 → 497
    TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:298 → 501
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_008962747.4 → XP_008960995.1  tRNA (uracil-5-)-methyltransferase homolog B isoform X1

    See identical proteins and their annotated locations for XP_008960995.1

    UniProtKB/TrEMBL
    A0A2R9BQZ0
    Conserved Domains (2) summary
    COG2265
    Location:94 → 497
    TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:298 → 501
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  3. XM_003810402.4 → XP_003810450.1  tRNA (uracil-5-)-methyltransferase homolog B isoform X1

    See identical proteins and their annotated locations for XP_003810450.1

    UniProtKB/TrEMBL
    A0A2R9BQZ0
    Conserved Domains (2) summary
    COG2265
    Location:94 → 497
    TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:298 → 501
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  4. XM_008962745.4 → XP_008960993.1  tRNA (uracil-5-)-methyltransferase homolog B isoform X1

    See identical proteins and their annotated locations for XP_008960993.1

    UniProtKB/TrEMBL
    A0A2R9BQZ0
    Conserved Domains (2) summary
    COG2265
    Location:94 → 497
    TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:298 → 501
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  5. XM_057301190.2 → XP_057157173.1  tRNA (uracil-5-)-methyltransferase homolog B isoform X1

    UniProtKB/TrEMBL
    A0A2R9BQZ0

  6. XM_003810400.4 → XP_003810448.1  tRNA (uracil-5-)-methyltransferase homolog B isoform X1

    See identical proteins and their annotated locations for XP_003810448.1

    UniProtKB/TrEMBL
    A0A2R9BQZ0
    Conserved Domains (2) summary
    COG2265
    Location:94 → 497
    TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:298 → 501
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  7. XM_008962746.4 → XP_008960994.1  tRNA (uracil-5-)-methyltransferase homolog B isoform X1

    See identical proteins and their annotated locations for XP_008960994.1

    UniProtKB/TrEMBL
    A0A2R9BQZ0
    Conserved Domains (2) summary
    COG2265
    Location:94 → 497
    TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:298 → 501
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  8. XM_008962749.4 → XP_008960997.1  tRNA (uracil-5-)-methyltransferase homolog B isoform X2

    Conserved Domains (2) summary
    COG2265
    Location:94 → 451
    TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:298 → 451
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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