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S100A4 S100 calcium binding protein A4 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100989703, updated on 3-Apr-2024

Summary

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Gene symbol
S100A4
Gene description
S100 calcium binding protein A4
See related
Ensembl:ENSPPAG00000014009
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 1 NC_073249.2 (96288008..96290345)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 1 NC_073249.1 (96023251..96025528)

Chromosome 1 - NC_073249.2Genomic Context describing neighboring genes Neighboring gene S100 calcium binding protein A2 Neighboring gene uncharacterized LOC130541071 Neighboring gene S100 calcium binding protein A3 Neighboring gene S100 calcium binding protein A5 Neighboring gene S100 calcium binding protein A6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RAGE receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transition metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein S100-A4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073249.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    96288008..96290345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003817166.5 → XP_003817214.2  protein S100-A4 isoform X1

  2. XM_063599109.1 → XP_063455179.1  protein S100-A4 isoform X2

    UniProtKB/TrEMBL
    A0A2R8ZE71
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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