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ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100988695, updated on 3-Apr-2024

Summary

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Gene symbol
ERCC1
Gene description
ERCC excision repair 1, endonuclease non-catalytic subunit
See related
Ensembl:ENSPPAG00000043568
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 20 NC_073269.2 (51568054..51639947, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 19 NC_073268.1 (53439598..53511447, complement)

Chromosome 20 - NC_073269.2Genomic Context describing neighboring genes Neighboring gene kinesin light chain 3 Neighboring gene ERCC excision repair 2, TFIIH core complex helicase subunit Neighboring gene protein phosphatase 1 regulatory subunit 13 like Neighboring gene RNA polymerase I subunit G Neighboring gene transfer RNA opal suppressor (anticodon UCA) Neighboring gene FosB proto-oncogene, AP-1 transcription factor subunit Neighboring gene reticulon 2 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UV-damage excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ERCC4-ERCC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleotide-excision repair factor 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA excision repair protein ERCC-1
Names
excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073269.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    51568054..51639947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063600399.1 → XP_063456469.1  DNA excision repair protein ERCC-1 isoform X3

    UniProtKB/TrEMBL
    A0A2R9CJ12

  2. XM_063600401.1 → XP_063456471.1  DNA excision repair protein ERCC-1 isoform X4

    UniProtKB/TrEMBL
    A0A2R9CJ25

  3. XM_057300526.2 → XP_057156509.1  DNA excision repair protein ERCC-1 isoform X3

    UniProtKB/TrEMBL
    A0A2R9CJ12

  4. XM_057300528.2 → XP_057156511.1  DNA excision repair protein ERCC-1 isoform X3

    UniProtKB/TrEMBL
    A0A2R9CJ12

  5. XM_063600405.1 → XP_063456475.1  DNA excision repair protein ERCC-1 isoform X5

    UniProtKB/TrEMBL
    A0A2R9CJ04

  6. XM_063600402.1 → XP_063456472.1  DNA excision repair protein ERCC-1 isoform X4

    UniProtKB/TrEMBL
    A0A2R9CJ25

  7. XM_057300529.2 → XP_057156512.1  DNA excision repair protein ERCC-1 isoform X4

    UniProtKB/TrEMBL
    A0A2R9CJ25

  8. XM_057300527.2 → XP_057156510.1  DNA excision repair protein ERCC-1 isoform X3

    UniProtKB/TrEMBL
    A0A2R9CJ12

  9. XM_034945622.3 → XP_034801513.1  DNA excision repair protein ERCC-1 isoform X3

    UniProtKB/TrEMBL
    A0A2R9CJ12
    Conserved Domains (2) summary
    PRK00558
    Location:251 → 291
    uvrC; excinuclease ABC subunit UvrC
    cd22325
    Location:99 → 226
    ERCC1_C-like; Central domain of ERCC1

  10. XM_003817521.6 → XP_003817569.1  DNA excision repair protein ERCC-1 isoform X3

    See identical proteins and their annotated locations for XP_003817569.1

    UniProtKB/TrEMBL
    A0A2R9CJ12
    Related
    ENSPPAP00000041944.1
    Conserved Domains (2) summary
    PRK00558
    Location:251 → 291
    uvrC; excinuclease ABC subunit UvrC
    cd22325
    Location:99 → 226
    ERCC1_C-like; Central domain of ERCC1

  11. XM_057300530.2 → XP_057156513.1  DNA excision repair protein ERCC-1 isoform X4

    UniProtKB/TrEMBL
    A0A2R9CJ25

  12. XM_063600404.1 → XP_063456474.1  DNA excision repair protein ERCC-1 isoform X5

    UniProtKB/TrEMBL
    A0A2R9CJ04

  13. XM_003817523.7 → XP_003817571.1  DNA excision repair protein ERCC-1 isoform X4

    See identical proteins and their annotated locations for XP_003817571.1

    UniProtKB/TrEMBL
    A0A2R9CJ25
    Related
    ENSPPAP00000041940.1
    Conserved Domains (2) summary
    pfam00633
    Location:235 → 264
    HHH; Helix-hairpin-helix motif
    cd22325
    Location:99 → 226
    ERCC1_C-like; Central domain of ERCC1

  14. XM_063600403.1 → XP_063456473.1  DNA excision repair protein ERCC-1 isoform X5

    UniProtKB/TrEMBL
    A0A2R9CJ04

  15. XM_063600400.1 → XP_063456470.1  DNA excision repair protein ERCC-1 isoform X3

    UniProtKB/TrEMBL
    A0A2R9CJ12

  16. XM_063600406.1 → XP_063456476.1  DNA excision repair protein ERCC-1 isoform X5

    UniProtKB/TrEMBL
    A0A2R9CJ04

  17. XM_034945620.3 → XP_034801511.1  DNA excision repair protein ERCC-1 isoform X2

    Conserved Domains (2) summary
    pfam00633
    Location:235 → 261
    HHH; Helix-hairpin-helix motif
    cd22325
    Location:99 → 226
    ERCC1_C-like; Central domain of ERCC1

  18. XM_057300525.2 → XP_057156508.1  DNA excision repair protein ERCC-1 isoform X2

  19. XM_034945619.3 → XP_034801510.1  DNA excision repair protein ERCC-1 isoform X1

    Conserved Domains (2) summary
    PRK00024
    Location:250 → 281
    PRK00024; DNA repair protein RadC
    cd22325
    Location:99 → 226
    ERCC1_C-like; Central domain of ERCC1

  20. XM_034945618.3 → XP_034801509.1  DNA excision repair protein ERCC-1 isoform X1

    Conserved Domains (2) summary
    PRK00024
    Location:250 → 281
    PRK00024; DNA repair protein RadC
    cd22325
    Location:99 → 226
    ERCC1_C-like; Central domain of ERCC1

  21. XM_055102960.2 → XP_054958935.1  DNA excision repair protein ERCC-1 isoform X1

  22. XM_014342725.5 → XP_014198211.1  DNA excision repair protein ERCC-1 isoform X1

    Conserved Domains (2) summary
    PRK00024
    Location:250 → 281
    PRK00024; DNA repair protein RadC
    cd22325
    Location:99 → 226
    ERCC1_C-like; Central domain of ERCC1

  23. XM_034945624.3 → XP_034801515.2  DNA excision repair protein ERCC-1 isoform X1

  24. XM_008970737.6 → XP_008968985.1  DNA excision repair protein ERCC-1 isoform X1

    See identical proteins and their annotated locations for XP_008968985.1

    Conserved Domains (2) summary
    PRK00024
    Location:250 → 281
    PRK00024; DNA repair protein RadC
    cd22325
    Location:99 → 226
    ERCC1_C-like; Central domain of ERCC1

  25. XM_008970736.6 → XP_008968984.1  DNA excision repair protein ERCC-1 isoform X1

    See identical proteins and their annotated locations for XP_008968984.1

    Conserved Domains (2) summary
    PRK00024
    Location:250 → 281
    PRK00024; DNA repair protein RadC
    cd22325
    Location:99 → 226
    ERCC1_C-like; Central domain of ERCC1
Nucleotide Protein
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