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HEXA hexosaminidase subunit alpha [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100986229, updated on 3-Apr-2024

Summary

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Gene symbol
HEXA
Gene description
hexosaminidase subunit alpha
See related
Ensembl:ENSPPAG00000037219 Ensembl:ENSPPAG00000042321
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
CELF6
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 16 NC_073265.2 (61548795..61643064, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 15 NC_073264.1 (65707784..65807320, complement)

Chromosome 16 - NC_073265.2Genomic Context describing neighboring genes Neighboring gene pyruvate kinase M1/2 Neighboring gene poly(ADP-ribose) polymerase family member 6 Neighboring gene large ribosomal subunit protein uL11-like Neighboring gene transmembrane protein 202

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-N-acetylhexosaminidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ganglioside catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosaminoglycan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-hexosaminidase subunit alpha
Names
CUGBP Elav-like family member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073265.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    61548795..61643064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055098495.2 → XP_054954470.2  beta-hexosaminidase subunit alpha isoform X9

  2. XM_055098492.2 → XP_054954467.1  beta-hexosaminidase subunit alpha isoform X7

  3. XM_063596769.1 → XP_063452839.1  beta-hexosaminidase subunit alpha isoform X4

  4. XM_055098490.2 → XP_054954465.2  beta-hexosaminidase subunit alpha isoform X2

  5. XM_055098493.2 → XP_054954468.1  beta-hexosaminidase subunit alpha isoform X6

  6. XM_055098491.2 → XP_054954466.1  beta-hexosaminidase subunit alpha isoform X5

  7. XM_055098494.2 → XP_054954469.2  beta-hexosaminidase subunit alpha isoform X8

  8. XM_055098489.2 → XP_054954464.2  beta-hexosaminidase subunit alpha isoform X3

  9. XM_034939066.3 → XP_034794957.2  beta-hexosaminidase subunit alpha isoform X1

  10. XM_063596772.1 → XP_063452842.1  beta-hexosaminidase subunit alpha isoform X12

  11. XM_003818558.5 → XP_003818606.3  beta-hexosaminidase subunit alpha isoform X17

    UniProtKB/TrEMBL
    A0A2R9CE22

  12. XM_003818557.5 → XP_003818605.3  beta-hexosaminidase subunit alpha isoform X14

    UniProtKB/TrEMBL
    A0A2R9CM92

  13. XM_008971894.4 → XP_008970142.3  beta-hexosaminidase subunit alpha isoform X15

  14. XM_008971893.4 → XP_008970141.3  beta-hexosaminidase subunit alpha isoform X16

  15. XM_057299872.2 → XP_057155855.1  beta-hexosaminidase subunit alpha isoform X18

    UniProtKB/TrEMBL
    A0A2R9CBD0

  16. XM_063596771.1 → XP_063452841.1  beta-hexosaminidase subunit alpha isoform X11

  17. XM_063596770.1 → XP_063452840.1  beta-hexosaminidase subunit alpha isoform X10

  18. XM_003818560.5 → XP_003818608.1  beta-hexosaminidase subunit alpha isoform X13

    See identical proteins and their annotated locations for XP_003818608.1

    UniProtKB/TrEMBL
    A0A2R9BFK9, A0A2R9BP72
    Related
    ENSPPAP00000028425.1
    Conserved Domains (2) summary
    cd06562
    Location:167 → 511
    GH20_HexA_HexB-like; Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the ...
    pfam14845
    Location:23 → 145
    Glycohydro_20b2; beta-acetyl hexosaminidase like
Nucleotide Protein
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