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PHF6 PHD finger protein 6 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100983062, updated on 8-Mar-2024

Summary

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Gene symbol
PHF6
Gene description
PHD finger protein 6
See related
Ensembl:ENSPPAG00000026545
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) X NC_073272.2 (133808035..133864349)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) X NC_073272.1 (133811627..133867947)

Chromosome X - NC_073272.2Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 160 Neighboring gene 5'-nucleotidase domain-containing protein 1-like Neighboring gene hypoxanthine phosphoribosyltransferase 1 Neighboring gene microRNA mir-450a-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073272.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    133808035..133864349
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008967178.6 → XP_008965426.1  PHD finger protein 6 isoform X3

    See identical proteins and their annotated locations for XP_008965426.1

    Conserved Domains (2) summary
    cd15710
    Location:17 → 131
    ePHD1_PHF6; Extended PHD finger 1 found in PHD finger protein 6 (PHF6)
    cl22851
    Location:213 → 283
    PHD_SF; PHD finger superfamily

  2. XM_055106223.2 → XP_054962198.1  PHD finger protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A2R8ZQU1

  3. XM_008967177.5 → XP_008965425.1  PHD finger protein 6 isoform X1

    See identical proteins and their annotated locations for XP_008965425.1

    Conserved Domains (2) summary
    cd15710
    Location:17 → 131
    ePHD1_PHF6; Extended PHD finger 1 found in PHD finger protein 6 (PHF6)
    cd15711
    Location:213 → 330
    ePHD2_PHF6; Extended PHD finger 2 found in PHD finger protein 6 (PHF6)

  4. XM_003814506.5 → XP_003814554.1  PHD finger protein 6 isoform X2

    See identical proteins and their annotated locations for XP_003814554.1

    UniProtKB/TrEMBL
    A0A2R8ZQU1
    Related
    ENSPPAP00000007332.1
    Conserved Domains (2) summary
    cd15710
    Location:17 → 131
    ePHD1_PHF6; Extended PHD finger 1 found in PHD finger protein 6 (PHF6)
    cd15711
    Location:212 → 329
    ePHD2_PHF6; Extended PHD finger 2 found in PHD finger protein 6 (PHF6)

  5. XM_034949516.3 → XP_034805407.1  PHD finger protein 6 isoform X1

    Conserved Domains (2) summary
    cd15710
    Location:17 → 131
    ePHD1_PHF6; Extended PHD finger 1 found in PHD finger protein 6 (PHF6)
    cd15711
    Location:213 → 330
    ePHD2_PHF6; Extended PHD finger 2 found in PHD finger protein 6 (PHF6)
Nucleotide Protein
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