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ZSCAN29 zinc finger and SCAN domain containing 29 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100975694, updated on 3-Apr-2024

Summary

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Gene symbol
ZSCAN29
Gene description
zinc finger and SCAN domain containing 29
See related
Ensembl:ENSPPAG00000001276
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See ZSCAN29 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 16 NC_073265.2 (32612752..32622522, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 15 NC_073264.1 (36771934..36784254, complement)

Chromosome 16 - NC_073265.2Genomic Context describing neighboring genes Neighboring gene transglutaminase 7 Neighboring gene leucine carboxyl methyltransferase 2 Neighboring gene adenosine deaminase like Neighboring gene tubulin gamma complex component 4 Neighboring gene tumor protein p53 binding protein 1 Neighboring gene microtubule associated protein 1A Neighboring gene diphosphoinositol pentakisphosphate kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and SCAN domain-containing protein 29

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073265.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    32612752..32622522 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008972995.5 → XP_008971243.1  zinc finger and SCAN domain-containing protein 29 isoform X1

    See identical proteins and their annotated locations for XP_008971243.1

    UniProtKB/TrEMBL
    A0A2R8ZCT9
    Related
    ENSPPAP00000000431.1
    Conserved Domains (8) summary
    smart00431
    Location:14 → 124
    SCAN; leucine rich region
    COG5048
    Location:630 → 836
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:680 → 700
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:790 → 812
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:14 → 102
    SCAN; SCAN domain
    pfam13465
    Location:748 → 773
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:408 → 489
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl23961
    Location:154 → 192
    DUF2106; Predicted membrane protein (DUF2106)

  2. XM_063596599.1 → XP_063452669.1  zinc finger and SCAN domain-containing protein 29 isoform X1

    UniProtKB/TrEMBL
    A0A2R8ZCT9

  3. XM_055098350.2 → XP_054954325.1  zinc finger and SCAN domain-containing protein 29 isoform X2

  4. XM_008973000.5 → XP_008971248.1  zinc finger and SCAN domain-containing protein 29 isoform X3

    Conserved Domains (5) summary
    COG5048
    Location:481 → 687
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:531 → 551
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:641 → 663
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:599 → 624
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:259 → 340
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein
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