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ATXN1 ataxin 1 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100964868, updated on 8-Mar-2024

Summary

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Gene symbol
ATXN1
Gene description
ataxin 1
See related
Ensembl:ENSOGAG00000028623
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852421.1 (12670432..13078627, complement)

NW_003852421.1Genomic Context describing neighboring genes Neighboring gene myosin regulatory light chain interacting protein Neighboring gene guanosine monophosphate reductase Neighboring gene kynurenine/alpha-aminoadipate aminotransferase, mitochondrial pseudogene Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852421 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852421.1 Reference OtoGar3

    Range
    12670432..13078627 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023512286.1 → XP_023368054.1  ataxin-1

    UniProtKB/TrEMBL
    H0XWV6
    Conserved Domains (4) summary
    smart00536
    Location:549 → 664
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:391 → 421
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl25764
    Location:88 → 233
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:90 → 489
    Atrophin-1; Atrophin-1 family

  2. XM_012804250.2 → XP_012659704.1  ataxin-1

    UniProtKB/TrEMBL
    H0XWV6
    Related
    ENSOGAP00000020599.1, ENSOGAT00000029885.1
    Conserved Domains (4) summary
    smart00536
    Location:549 → 664
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:391 → 421
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl25764
    Location:88 → 233
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:90 → 489
    Atrophin-1; Atrophin-1 family

  3. XM_023512285.1 → XP_023368053.1  ataxin-1

    UniProtKB/TrEMBL
    H0XWV6
    Conserved Domains (4) summary
    smart00536
    Location:549 → 664
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:391 → 421
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl25764
    Location:88 → 233
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:90 → 489
    Atrophin-1; Atrophin-1 family

  4. XM_023512289.1 → XP_023368057.1  ataxin-1

    UniProtKB/TrEMBL
    H0XWV6
    Conserved Domains (4) summary
    smart00536
    Location:549 → 664
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:391 → 421
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl25764
    Location:88 → 233
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:90 → 489
    Atrophin-1; Atrophin-1 family

  5. XM_023512284.1 → XP_023368052.1  ataxin-1

    UniProtKB/TrEMBL
    H0XWV6
    Conserved Domains (4) summary
    smart00536
    Location:549 → 664
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:391 → 421
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl25764
    Location:88 → 233
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:90 → 489
    Atrophin-1; Atrophin-1 family

  6. XM_023512288.1 → XP_023368056.1  ataxin-1

    UniProtKB/TrEMBL
    H0XWV6
    Conserved Domains (4) summary
    smart00536
    Location:549 → 664
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:391 → 421
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl25764
    Location:88 → 233
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:90 → 489
    Atrophin-1; Atrophin-1 family

  7. XM_023512287.1 → XP_023368055.1  ataxin-1

    UniProtKB/TrEMBL
    H0XWV6
    Conserved Domains (4) summary
    smart00536
    Location:549 → 664
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:391 → 421
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl25764
    Location:88 → 233
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:90 → 489
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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