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ARID4A AT-rich interaction domain 4A [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100961444, updated on 8-Mar-2024

Summary

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Gene symbol
ARID4A
Gene description
AT-rich interaction domain 4A
See related
Ensembl:ENSOGAG00000000385
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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See ARID4A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852476.1 (3066338..3159479)

NW_003852476.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene proteasome 20S subunit alpha 3 Neighboring gene uncharacterized LOC111726805 Neighboring gene translocase of outer mitochondrial membrane 20 like Neighboring gene translocase of inner mitochondrial membrane 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852476 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 4A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852476.1 Reference OtoGar3

    Range
    3066338..3159479
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023515869.1 → XP_023371637.1  AT-rich interactive domain-containing protein 4A

    UniProtKB/TrEMBL
    H0WGA9
    Conserved Domains (4) summary
    smart00501
    Location:312 → 401
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    pfam08169
    Location:175 → 261
    RBB1NT; RBB1NT (NUC162) domain
    pfam11717
    Location:575 → 629
    Tudor-knot; RNA binding activity-knot of a chromodomain

  2. XM_003794414.3 → XP_003794462.1  AT-rich interactive domain-containing protein 4A

    UniProtKB/TrEMBL
    H0WGA9
    Related
    ENSOGAP00000000343.2, ENSOGAT00000000386.2
    Conserved Domains (4) summary
    smart00501
    Location:312 → 401
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    pfam08169
    Location:175 → 261
    RBB1NT; RBB1NT (NUC162) domain
    pfam11717
    Location:575 → 629
    Tudor-knot; RNA binding activity-knot of a chromodomain
Nucleotide Protein
Heading Accession and Version

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