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TRIM17 tripartite motif containing 17 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100960662, updated on 8-Mar-2024

Summary

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Gene symbol
TRIM17
Gene description
tripartite motif containing 17
See related
Ensembl:ENSOGAG00000009217
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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See TRIM17 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852680.1 (839034..843805, complement)

NW_003852680.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene tripartite motif containing 11 Neighboring gene histone H2A type 3 Neighboring gene H3.4 histone, cluster member

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852680 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852680.1 Reference OtoGar3

    Range
    839034..843805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003803202.1 → XP_003803250.1  E3 ubiquitin-protein ligase TRIM17

    UniProtKB/TrEMBL
    H0X043
    Related
    ENSOGAP00000008257.2, ENSOGAT00000009219.2
    Conserved Domains (4) summary
    smart00336
    Location:94 → 135
    BBOX; B-Box-type zinc finger
    cd00162
    Location:15 → 68
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam13863
    Location:144 → 214
    DUF4200; Domain of unknown function (DUF4200)
    cd15812
    Location:296 → 473
    SPRY_PRY_TRIM17; PRY/SPRY domain of tripartite motif-binding protein 17 (TRIM17), also known as testis RING finger protein (terf)
Nucleotide Protein
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