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CCDC88A coiled-coil domain containing 88A [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100959958, updated on 8-Mar-2024

Summary

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Gene symbol
CCDC88A
Gene description
coiled-coil domain containing 88A
See related
Ensembl:ENSOGAG00000004308
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852419.1 (13073928..13195887, complement)

NW_003852419.1Genomic Context describing neighboring genes Neighboring gene mitochondrial translational initiation factor 2 Neighboring gene prolyl-tRNA synthetase associated domain-containing protein 1 Neighboring gene U6 spliceosomal RNA Neighboring gene tubulin alpha-1B chain-like Neighboring gene U6 spliceosomal RNA Neighboring gene cilia and flagella associated protein 36

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852419 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein light intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton-dependent intracellular transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
girdin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852419.1 Reference OtoGar3

    Range
    13073928..13195887 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023512091.1 → XP_023367859.1  girdin isoform X10

    Conserved Domains (2) summary
    cl25732
    Location:491 → 1307
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27381
    Location:1178 → 1585
    Myosin_head; Myosin head (motor domain)

  2. XM_012804042.2 → XP_012659496.1  girdin isoform X12

    Conserved Domains (6) summary
    TIGR04523
    Location:493 → 1205
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam05622
    Location:18 → 584
    HOOK; HOOK protein
    pfam06156
    Location:1061 → 1107
    DUF972; Protein of unknown function (DUF972)
    pfam10211
    Location:613 → 702
    Ax_dynein_light; Axonemal dynein light chain
    cl09111
    Location:766 → 859
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    cl19252
    Location:825 → 945
    MreC; rod shape-determining protein MreC

  3. XM_023512092.1 → XP_023367860.1  girdin isoform X11

    Conserved Domains (1) summary
    cl25732
    Location:491 → 1308
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_012804041.2 → XP_012659495.1  girdin isoform X9

    UniProtKB/TrEMBL
    H0WPM0
    Related
    ENSOGAP00000003847.2, ENSOGAT00000004312.2
    Conserved Domains (6) summary
    TIGR04523
    Location:493 → 1205
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam05622
    Location:18 → 584
    HOOK; HOOK protein
    pfam06156
    Location:1061 → 1107
    DUF972; Protein of unknown function (DUF972)
    pfam10211
    Location:613 → 702
    Ax_dynein_light; Axonemal dynein light chain
    cl09111
    Location:766 → 859
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    cl19252
    Location:825 → 945
    MreC; rod shape-determining protein MreC

  5. XM_023512090.1 → XP_023367858.1  girdin isoform X8

    Conserved Domains (2) summary
    cl25732
    Location:491 → 1331
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27381
    Location:1179 → 1541
    Myosin_head; Myosin head (motor domain)

  6. XM_023512087.1 → XP_023367855.1  girdin isoform X5

    Conserved Domains (2) summary
    cl25732
    Location:491 → 1330
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27381
    Location:1178 → 1585
    Myosin_head; Myosin head (motor domain)

  7. XM_023512084.1 → XP_023367852.1  girdin isoform X2

    Conserved Domains (2) summary
    cl25732
    Location:491 → 1330
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27381
    Location:1178 → 1540
    Myosin_head; Myosin head (motor domain)

  8. XM_023512089.1 → XP_023367857.1  girdin isoform X7

    Conserved Domains (1) summary
    cl25732
    Location:491 → 1331
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_023512085.1 → XP_023367853.1  girdin isoform X3

    Conserved Domains (1) summary
    cl25732
    Location:491 → 1331
    SMC_N; RecF/RecN/SMC N terminal domain

  10. XM_023512088.1 → XP_023367856.1  girdin isoform X6

    Conserved Domains (2) summary
    cl25732
    Location:491 → 1331
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27381
    Location:1179 → 1541
    Myosin_head; Myosin head (motor domain)

  11. XM_023512086.1 → XP_023367854.1  girdin isoform X4

    Conserved Domains (2) summary
    cl25732
    Location:491 → 1331
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27381
    Location:1179 → 1586
    Myosin_head; Myosin head (motor domain)

  12. XM_023512083.1 → XP_023367851.1  girdin isoform X1

    Conserved Domains (2) summary
    cl25732
    Location:491 → 1331
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27381
    Location:1179 → 1541
    Myosin_head; Myosin head (motor domain)
Nucleotide Protein
Heading Accession and Version

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