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ZEB1 zinc finger E-box binding homeobox 1 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100958793, updated on 8-Mar-2024

Summary

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Gene symbol
ZEB1
Gene description
zinc finger E-box binding homeobox 1
See related
Ensembl:ENSOGAG00000008365
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852414.1 (4895808..5088355, complement)

NW_003852414.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 12 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene zinc finger protein 438 Neighboring gene supervillin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852414 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger E-box-binding homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852414.1 Reference OtoGar3

    Range
    4895808..5088355 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003786728.2 → XP_003786776.1  zinc finger E-box-binding homeobox 1 isoform X3

    Conserved Domains (6) summary
    smart00389
    Location:573 → 609
    HOX; Homeodomain
    COG5048
    Location:909 → 962
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:886 → 906
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:220 → 242
    zf-C2H2; Zinc finger, C2H2 type
    pfam08690
    Location:9 → 150
    GET2; GET complex subunit GET2
    pfam13465
    Location:926 → 951
    zf-H2C2_2; Zinc-finger double domain

  2. XM_012803345.2 → XP_012658799.1  zinc finger E-box-binding homeobox 1 isoform X2

    UniProtKB/TrEMBL
    H0WYB8
    Related
    ENSOGAP00000007495.2, ENSOGAT00000008370.2
    Conserved Domains (5) summary
    smart00389
    Location:593 → 629
    HOX; Homeodomain
    COG5048
    Location:929 → 982
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:906 → 926
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:240 → 262
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:946 → 971
    zf-H2C2_2; Zinc-finger double domain

  3. XM_003786726.2 → XP_003786774.1  zinc finger E-box-binding homeobox 1 isoform X1

    Conserved Domains (5) summary
    smart00389
    Location:594 → 630
    HOX; Homeodomain
    COG5048
    Location:930 → 983
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:907 → 927
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:241 → 263
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:947 → 972
    zf-H2C2_2; Zinc-finger double domain

  4. XM_023511333.1 → XP_023367101.1  zinc finger E-box-binding homeobox 1 isoform X4

    Conserved Domains (4) summary
    smart00389
    Location:375 → 411
    HOX; Homeodomain
    sd00017
    Location:688 → 708
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:22 → 44
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:728 → 753
    zf-H2C2_2; Zinc-finger double domain

  5. XM_012803347.2 → XP_012658801.1  zinc finger E-box-binding homeobox 1 isoform X4

    See identical proteins and their annotated locations for XP_012658801.1

    Conserved Domains (4) summary
    smart00389
    Location:375 → 411
    HOX; Homeodomain
    sd00017
    Location:688 → 708
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:22 → 44
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:728 → 753
    zf-H2C2_2; Zinc-finger double domain

  6. XM_023511334.1 → XP_023367102.1  zinc finger E-box-binding homeobox 1 isoform X4

    Conserved Domains (4) summary
    smart00389
    Location:375 → 411
    HOX; Homeodomain
    sd00017
    Location:688 → 708
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:22 → 44
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:728 → 753
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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