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OTUD7B OTU deubiquitinase 7B [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100956336, updated on 8-Mar-2024

Summary

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Gene symbol
OTUD7B
Gene description
OTU deubiquitinase 7B
See related
Ensembl:ENSOGAG00000030526
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852569.1 (3174968..3238528)

NW_003852569.1Genomic Context describing neighboring genes Neighboring gene protein FAM45A-like Neighboring gene N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase pseudogene Neighboring gene small nucleolar RNA SNORA32 Neighboring gene myotubularin related protein 11 Neighboring gene splicing factor 3b subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852569 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K11-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K48-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
OTU domain-containing protein 7B
Names
OTU domain containing 7B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852569.1 Reference OtoGar3

    Range
    3174968..3238528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003800415.3 → XP_003800463.1  OTU domain-containing protein 7B isoform X1

    UniProtKB/TrEMBL
    H0XKA1
    Conserved Domains (4) summary
    cd14347
    Location:4 → 46
    UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
    pfam01754
    Location:801 → 823
    zf-A20; A20-like zinc finger
    cl19932
    Location:189 → 359
    OTU; OTU-like cysteine protease
    cl25756
    Location:440 → 578
    BASP1; Brain acid soluble protein 1 (BASP1 protein)

  2. XM_023519416.1 → XP_023375184.1  OTU domain-containing protein 7B isoform X2

    UniProtKB/TrEMBL
    H0XKA1
    Conserved Domains (3) summary
    pfam01754
    Location:709 → 731
    zf-A20; A20-like zinc finger
    cl19932
    Location:97 → 267
    OTU; OTU-like cysteine protease
    cl25756
    Location:348 → 486
    BASP1; Brain acid soluble protein 1 (BASP1 protein)

  3. XM_023519415.1 → XP_023375183.1  OTU domain-containing protein 7B isoform X1

    UniProtKB/TrEMBL
    H0XKA1
    Related
    ENSOGAP00000016541.1, ENSOGAT00000034906.1
    Conserved Domains (4) summary
    cd14347
    Location:4 → 46
    UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
    pfam01754
    Location:801 → 823
    zf-A20; A20-like zinc finger
    cl19932
    Location:189 → 359
    OTU; OTU-like cysteine protease
    cl25756
    Location:440 → 578
    BASP1; Brain acid soluble protein 1 (BASP1 protein)

  4. XM_023519414.1 → XP_023375182.1  OTU domain-containing protein 7B isoform X1

    UniProtKB/TrEMBL
    H0XKA1
    Conserved Domains (4) summary
    cd14347
    Location:4 → 46
    UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
    pfam01754
    Location:801 → 823
    zf-A20; A20-like zinc finger
    cl19932
    Location:189 → 359
    OTU; OTU-like cysteine protease
    cl25756
    Location:440 → 578
    BASP1; Brain acid soluble protein 1 (BASP1 protein)
Nucleotide Protein
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