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XRN1 5'-3' exoribonuclease 1 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100950599, updated on 8-Mar-2024

Summary

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Gene symbol
XRN1
Gene description
5'-3' exoribonuclease 1
See related
Ensembl:ENSOGAG00000000170
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
41
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852427.1 (11875062..12007835, complement)

NW_003852427.1Genomic Context describing neighboring genes Neighboring gene U7 small nuclear RNA Neighboring gene glycerol kinase 5 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein S13 pseudogene Neighboring gene kelch-like protein 12 Neighboring gene ATR serine/threonine kinase Neighboring gene c-Myc-binding protein pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852427 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5'-3' exoribonuclease 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852427.1 Reference OtoGar3

    Range
    11875062..12007835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023512996.1 → XP_023368764.1  5'-3' exoribonuclease 1

    UniProtKB/TrEMBL
    H0WFW2
    Related
    ENSOGAP00000000151.2, ENSOGAT00000000170.2
    Conserved Domains (2) summary
    pfam03368
    Location:1407 → 1466
    Dicer_dimer; Dicer dimerisation domain
    cl27292
    Location:1 → 695
    XRN_N; XRN 5'-3' exonuclease N-terminus
Nucleotide Protein
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