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TPM1 tropomyosin 1 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100942147, updated on 8-Mar-2024

Summary

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Gene symbol
TPM1
Gene description
tropomyosin 1
See related
Ensembl:ENSOGAG00000002509
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852406.1 (15302141..15328231)

NW_003852406.1Genomic Context describing neighboring genes Neighboring gene talin 2 Neighboring gene U6 spliceosomal RNA Neighboring gene translation machinery-associated protein 7 pseudogene Neighboring gene lactamase beta Neighboring gene ribosomal protein S27 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852406 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tropomyosin alpha-1 chain
Names
tropomyosin 1 (alpha)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852406.1 Reference OtoGar3

    Range
    15302141..15328231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012801886.2 → XP_012657340.1  tropomyosin alpha-1 chain isoform X1

    See identical proteins and their annotated locations for XP_012657340.1

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  2. XM_012801888.2 → XP_012657342.1  tropomyosin alpha-1 chain isoform X6

    See identical proteins and their annotated locations for XP_012657342.1

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  3. XM_012801887.2 → XP_012657341.1  tropomyosin alpha-1 chain isoform X2

    See identical proteins and their annotated locations for XP_012657341.1

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  4. XM_003784399.3 → XP_003784447.1  tropomyosin alpha-1 chain isoform X4

    See identical proteins and their annotated locations for XP_003784447.1

    UniProtKB/TrEMBL
    H0WKW3
    Related
    ENSOGAP00000002244.2, ENSOGAT00000002513.2
    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  5. XM_012801889.2 → XP_012657343.1  tropomyosin alpha-1 chain isoform X3

    See identical proteins and their annotated locations for XP_012657343.1

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  6. XM_012801890.1 → XP_012657344.1  tropomyosin alpha-1 chain isoform X7

    See identical proteins and their annotated locations for XP_012657344.1

    Conserved Domains (2) summary
    pfam00261
    Location:48 → 282
    Tropomyosin; Tropomyosin
    pfam07851
    Location:180 → 274
    TMPIT; TMPIT-like protein

  7. XM_012801899.2 → XP_012657353.1  tropomyosin alpha-1 chain isoform X14

    Conserved Domains (2) summary
    PRK12472
    Location:18 → 127
    PRK12472; hypothetical protein; Provisional
    pfam00261
    Location:90 → 324
    Tropomyosin

  8. XM_012801891.1 → XP_012657345.1  tropomyosin alpha-1 chain isoform X5

    See identical proteins and their annotated locations for XP_012657345.1

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  9. XM_012801892.1 → XP_012657346.1  tropomyosin alpha-1 chain isoform X8

    See identical proteins and their annotated locations for XP_012657346.1

    Conserved Domains (1) summary
    pfam00261
    Location:48 → 282
    Tropomyosin

  10. XM_012801898.2 → XP_012657352.1  tropomyosin alpha-1 chain isoform X13

    See identical proteins and their annotated locations for XP_012657352.1

    Conserved Domains (1) summary
    pfam00261
    Location:1 → 156
    Tropomyosin; Tropomyosin

  11. XM_012801893.2 → XP_012657347.1  tropomyosin alpha-1 chain isoform X11

    Conserved Domains (2) summary
    pfam00261
    Location:12 → 246
    Tropomyosin; Tropomyosin
    pfam07851
    Location:144 → 238
    TMPIT; TMPIT-like protein

  12. XM_012801896.1 → XP_012657350.1  tropomyosin alpha-1 chain isoform X12

    Conserved Domains (2) summary
    pfam00261
    Location:12 → 246
    Tropomyosin; Tropomyosin
    pfam07851
    Location:144 → 228
    TMPIT; TMPIT-like protein

  13. XM_012801901.2 → XP_012657355.1  tropomyosin alpha-1 chain isoform X16

    Conserved Domains (1) summary
    pfam00261
    Location:12 → 244
    Tropomyosin; Tropomyosin

  14. XM_012801895.1 → XP_012657349.1  tropomyosin alpha-1 chain isoform X10

    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin; Tropomyosin

  15. XM_012801894.2 → XP_012657348.1  tropomyosin alpha-1 chain isoform X9

    Conserved Domains (1) summary
    pfam00261
    Location:12 → 246
    Tropomyosin; Tropomyosin

  16. XM_012801900.2 → XP_012657354.1  tropomyosin alpha-1 chain isoform X15

    Conserved Domains (2) summary
    pfam00261
    Location:12 → 244
    Tropomyosin; Tropomyosin
    pfam07851
    Location:144 → 226
    TMPIT; TMPIT-like protein
Nucleotide Protein
Heading Accession and Version

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