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USP9X ubiquitin specific peptidase 9 X-linked [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100934769, updated on 8-Mar-2024

Summary

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Gene symbol
USP9X
Gene description
ubiquitin specific peptidase 9 X-linked
See related
Ensembl:ENSSHAG00000008762
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
45
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 3 NC_045428.1 (251174686..251421819, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 3 Unlocalized Scaffold NW_003831554.1 (459493..631150, complement)

Chromosome 3 - NC_045428.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116423099 Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene uncharacterized LOC116422347 Neighboring gene mediator complex subunit 14 Neighboring gene chromosome 3 CXorf38 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ubiquitin carboxyl-terminal hydrolase FAF-X

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045428.1 Reference mSarHar1.11 Primary Assembly

    Range
    251174686..251421819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031959411.1 → XP_031815271.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X3

    Conserved Domains (3) summary
    cd02659
    Location:1550 → 1953
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2092 → 2471
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:881 → 964
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_031959409.1 → XP_031815269.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1

    Conserved Domains (3) summary
    cd02659
    Location:1555 → 1958
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2097 → 2476
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:881 → 964
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  3. XM_031959412.1 → XP_031815272.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X4

    Conserved Domains (3) summary
    cd02659
    Location:1550 → 1953
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2092 → 2471
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:881 → 964
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  4. XM_031959410.1 → XP_031815270.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X2

    UniProtKB/TrEMBL
    G3W3Y4
    Related
    ENSSHAP00000010139.2, ENSSHAT00000010228.2
    Conserved Domains (3) summary
    cd02659
    Location:1555 → 1958
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2097 → 2476
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:881 → 964
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
Heading Accession and Version

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