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PRDM1 PR/SET domain 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100934190, updated on 8-Mar-2024

Summary

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Gene symbol
PRDM1
Gene description
PR/SET domain 1
See related
Ensembl:ENSSHAG00000010080
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See PRDM1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 4 NC_045429.1 (196031068..196056722, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 4 Unlocalized Scaffold NW_003838944.1 (633910..659813)

Chromosome 4 - NC_045429.1Genomic Context describing neighboring genes Neighboring gene reticulon 4 interacting protein 1 Neighboring gene crystallin beta-gamma domain containing 1 Neighboring gene autophagy related 5 Neighboring gene prolyl endopeptidase Neighboring gene popeye domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045429.1 Reference mSarHar1.11 Primary Assembly

    Range
    196031068..196056722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003769326.4 → XP_003769374.1  PR domain zinc finger protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A7N4NNU1, G3W8I6
    Related
    ENSSHAP00000011741.2, ENSSHAT00000011837.2
    Conserved Domains (5) summary
    smart00317
    Location:86 → 206
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:504 → 679
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:568 → 588
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:566 → 588
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:608 → 633
    zf-H2C2_2; Zinc-finger double domain

  2. XM_012549257.3 → XP_012404711.1  PR domain zinc finger protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A7N4NNU1, G3W8I5
    Related
    ENSSHAP00000011740.2, ENSSHAT00000011836.2
    Conserved Domains (5) summary
    smart00317
    Location:50 → 170
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:468 → 643
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:532 → 552
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:530 → 552
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:572 → 597
    zf-H2C2_2; Zinc-finger double domain

  3. XM_031964468.1 → XP_031820328.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A7N4P5P5

  4. XM_031964469.1 → XP_031820329.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A7N4P5P5
    Related
    ENSSHAP00000032621.1, ENSSHAT00000024627.1
Nucleotide Protein
Heading Accession and Version

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