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SBF2 SET binding factor 2 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100933761, updated on 8-Mar-2024

Summary

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Gene symbol
SBF2
Gene description
SET binding factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
42
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 6 NC_045431.1 (202276028..202706230, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 6 Unlocalized Scaffold NW_003846890.1 (4015994..4369233, complement)

Chromosome 6 - NC_045431.1Genomic Context describing neighboring genes Neighboring gene switching B cell complex subunit SWAP70 Neighboring gene uncharacterized LOC105750936 Neighboring gene DCN1-like protein 1 pseudogene Neighboring gene adrenomedullin Neighboring gene vegetative cell wall protein gp1-like Neighboring gene adenosine monophosphate deaminase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
myotubularin-related protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045431.1 Reference mSarHar1.11 Primary Assembly

    Range
    202276028..202706230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031941976.1 → XP_031797836.1  myotubularin-related protein 13 isoform X3

    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1767 → 1872
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    cd13339
    Location:882 → 1000
    PH-GRAM_MTMR13; Myotubularian (MTM) related 13 protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd14589
    Location:1138 → 1510
    PTP-MTMR13; protein tyrosine phosphatase-like pseudophosphatase domain of myotubularin related phosphoinositide phosphatase 13
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein

  2. XM_031941975.1 → XP_031797835.1  myotubularin-related protein 13 isoform X2

    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1774 → 1879
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    cd13339
    Location:882 → 1000
    PH-GRAM_MTMR13; Myotubularian (MTM) related 13 protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd14589
    Location:1138 → 1517
    PTP-MTMR13; protein tyrosine phosphatase-like pseudophosphatase domain of myotubularin related phosphoinositide phosphatase 13
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein

  3. XM_031941974.1 → XP_031797834.1  myotubularin-related protein 13 isoform X1

    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1799 → 1904
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    cd13339
    Location:882 → 1000
    PH-GRAM_MTMR13; Myotubularian (MTM) related 13 protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl28904
    Location:1138 → 1542
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

  4. XM_031941977.1 → XP_031797837.1  myotubularin-related protein 13 isoform X4

    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1742 → 1847
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    cd13339
    Location:882 → 1000
    PH-GRAM_MTMR13; Myotubularian (MTM) related 13 protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd14589
    Location:1138 → 1485
    PTP-MTMR13; protein tyrosine phosphatase-like pseudophosphatase domain of myotubularin related phosphoinositide phosphatase 13
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
Nucleotide Protein
Heading Accession and Version

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