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PAN2 poly(A) specific ribonuclease subunit PAN2 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100932645, updated on 8-Mar-2024

Summary

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Gene symbol
PAN2
Gene description
poly(A) specific ribonuclease subunit PAN2
See related
Ensembl:ENSSHAG00000000122
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See PAN2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
25
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 5 NC_045430.1 (84269337..84283545)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 5 Unlocalized Scaffold NW_003845195.1 (853..10862)

Chromosome 5 - NC_045430.1Genomic Context describing neighboring genes Neighboring gene signal transducer and activator of transcription 2 Neighboring gene interleukin 23 subunit alpha Neighboring gene canopy FGF signaling regulator 2 Neighboring gene citrate synthase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of PAN complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PAN2-PAN3 deadenylation complex catalytic subunit PAN2
Names
PAN2 poly(A) specific ribonuclease subunit homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045430.1 Reference mSarHar1.11 Primary Assembly

    Range
    84269337..84283545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031941177.1 → XP_031797037.1  PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X2

    UniProtKB/TrEMBL
    G3VAE2
    Conserved Domains (3) summary
    cd06143
    Location:970 → 1143
    PAN2_exo; DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2
    pfam13423
    Location:517 → 893
    UCH_1; Ubiquitin carboxyl-terminal hydrolase
    cl29593
    Location:204 → 358
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_031941176.1 → XP_031797036.1  PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1

    UniProtKB/TrEMBL
    G3VAE2
    Related
    ENSSHAP00000000147.2, ENSSHAT00000000150.2
    Conserved Domains (3) summary
    cd06143
    Location:971 → 1144
    PAN2_exo; DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2
    pfam13423
    Location:517 → 894
    UCH_1; Ubiquitin carboxyl-terminal hydrolase
    cl29593
    Location:204 → 358
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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