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SLF1 SMC5-SMC6 complex localization factor 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100929197, updated on 8-Mar-2024

Summary

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Gene symbol
SLF1
Gene description
SMC5-SMC6 complex localization factor 1
See related
Ensembl:ENSSHAG00000009650
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 1 NC_045426.1 (189632704..189722860)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 2 Unlocalized Scaffold NW_003823284.1 (571100..655818, complement)

Chromosome 1 - NC_045426.1Genomic Context describing neighboring genes Neighboring gene ARB2 cotranscriptional regulator A Neighboring gene uncharacterized LOC116423452 Neighboring gene uncharacterized LOC116423450 Neighboring gene KIAA0825 ortholog Neighboring gene multiple C2 and transmembrane domain containing 1 Neighboring gene neo-calmodulin pseudogene Neighboring gene family with sequence similarity 81 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SMC5-SMC6 complex localization factor protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045426.1 Reference mSarHar1.11 Primary Assembly

    Range
    189632704..189722860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031949579.1 → XP_031805439.1  SMC5-SMC6 complex localization factor protein 1 isoform X1

    UniProtKB/TrEMBL
    G3W710
    Conserved Domains (3) summary
    sd00045
    Location:651 → 682
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:655 → 748
    Ank_2; Ankyrin repeats (3 copies)
    cl00038
    Location:6 → 85
    BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

  2. XM_012541376.3 → XP_012396830.1  SMC5-SMC6 complex localization factor protein 1 isoform X1

    UniProtKB/TrEMBL
    G3W710
    Related
    ENSSHAP00000011215.2, ENSSHAT00000011309.2
    Conserved Domains (3) summary
    sd00045
    Location:651 → 682
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:655 → 748
    Ank_2; Ankyrin repeats (3 copies)
    cl00038
    Location:6 → 85
    BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

  3. XM_031949683.1 → XP_031805543.1  SMC5-SMC6 complex localization factor protein 1 isoform X1

    UniProtKB/TrEMBL
    G3W710
    Conserved Domains (3) summary
    sd00045
    Location:651 → 682
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:655 → 748
    Ank_2; Ankyrin repeats (3 copies)
    cl00038
    Location:6 → 85
    BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

  4. XM_031949750.1 → XP_031805610.1  SMC5-SMC6 complex localization factor protein 1 isoform X2

    UniProtKB/TrEMBL
    G3W710
    Conserved Domains (3) summary
    sd00045
    Location:548 → 579
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:552 → 645
    Ank_2; Ankyrin repeats (3 copies)
    cl00038
    Location:24 → 94
    BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains
Nucleotide Protein
Heading Accession and Version

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