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CARF calcium responsive transcription factor [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100925258, updated on 8-Mar-2024

Summary

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Gene symbol
CARF
Gene description
calcium responsive transcription factor
See related
Ensembl:ENSSHAG00000006210
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Also known as
ALS2CR8
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 3 NC_045428.1 (80818177..80876351, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 3 Unlocalized Scaffold NW_003831912.1 (211734..267663, complement)

Chromosome 3 - NC_045428.1Genomic Context describing neighboring genes Neighboring gene alpha-aspartyl dipeptidase Neighboring gene neurobeachin like 1 Neighboring gene WD repeat domain 12 Neighboring gene islet cell autoantigen 1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: calcium-responsive transcription factor
Names
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045428.1 Reference mSarHar1.11 Primary Assembly

    Range
    80818177..80876351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031958307.1 → XP_031814167.1  LOW QUALITY PROTEIN: calcium-responsive transcription factor

    UniProtKB/TrEMBL
    G3VVE3
    Related
    ENSSHAP00000007148.2, ENSSHAT00000007210.2
    Conserved Domains (1) summary
    pfam15299
    Location:264 → 492
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
Nucleotide Protein
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