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MID1 midline 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100925173, updated on 8-Mar-2024

Summary

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Gene symbol
MID1
Gene description
midline 1
See related
Ensembl:ENSSHAG00000014062
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See MID1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 3 NC_045428.1 (203196951..203390037)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 3 Unlocalized Scaffold NW_003831822.1 (1386330..1585735)

Chromosome 3 - NC_045428.1Genomic Context describing neighboring genes Neighboring gene clathrin light chain A pseudogene Neighboring gene uncharacterized LOC116422309 Neighboring gene uncharacterized LOC116422310 Neighboring gene uncharacterized LOC116423082 Neighboring gene chloride voltage-gated channel 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase Midline-1
Names
midline 1 (Opitz/BBB syndrome)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045428.1 Reference mSarHar1.11 Primary Assembly

    Range
    203196951..203390037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023500345.2 → XP_023356113.1  E3 ubiquitin-protein ligase Midline-1

    UniProtKB/TrEMBL
    G3WM73
    Conserved Domains (5) summary
    smart00336
    Location:171 → 212
    BBOX; B-Box-type zinc finger
    cd00063
    Location:381 → 481
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12892
    Location:485 → 661
    SPRY_PRY_TRIM18; PRY/SPRY domain of TRIM18/MID1, also known as FXY or RNF59
    cd16753
    Location:8 → 61
    RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins
    cl25407
    Location:219 → 344
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  2. XM_003765587.4 → XP_003765635.1  E3 ubiquitin-protein ligase Midline-1

    UniProtKB/TrEMBL
    G3WM73
    Related
    ENSSHAP00000016528.2, ENSSHAT00000016666.2
    Conserved Domains (5) summary
    smart00336
    Location:171 → 212
    BBOX; B-Box-type zinc finger
    cd00063
    Location:381 → 481
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12892
    Location:485 → 661
    SPRY_PRY_TRIM18; PRY/SPRY domain of TRIM18/MID1, also known as FXY or RNF59
    cd16753
    Location:8 → 61
    RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins
    cl25407
    Location:219 → 344
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
Nucleotide Protein
Heading Accession and Version

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