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SLITRK4 SLIT and NTRK like family member 4 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100924434, updated on 8-Mar-2024

Summary

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Gene symbol
SLITRK4
Gene description
SLIT and NTRK like family member 4
See related
Ensembl:ENSSHAG00000028656
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
5
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) X NC_045432.1 (45615803..45628998, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) X Unlocalized Scaffold NW_003849615.1 (55958..58489, complement)

Chromosome X - NC_045432.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene ras-related protein Rab-2A Neighboring gene gamma-soluble NSF attachment protein pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLIT and NTRK-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045432.1 Reference mSarHar1.11 Primary Assembly

    Range
    45615803..45628998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031944411.1 → XP_031800271.1  SLIT and NTRK-like protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A7N4PK20
    Conserved Domains (5) summary
    TIGR00864
    Location:566 → 627
    PCC; polycystin cation channel protein
    sd00031
    Location:269 → 281
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:127 → 148
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:79 → 317
    internalin_A; class 1 internalin InlA
    pfam13855
    Location:466 → 523
    LRR_8; Leucine rich repeat

  2. XM_031944412.1 → XP_031800272.1  SLIT and NTRK-like protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A7N4PK20, A0A7N4PRA8
    Related
    ENSSHAP00000041416.1, ENSSHAT00000042831.1
    Conserved Domains (5) summary
    TIGR00864
    Location:503 → 564
    PCC; polycystin cation channel protein
    sd00031
    Location:206 → 218
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:64 → 85
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:16 → 254
    internalin_A; class 1 internalin InlA
    pfam13855
    Location:403 → 460
    LRR_8; Leucine rich repeat

  3. XM_031944413.1 → XP_031800273.1  SLIT and NTRK-like protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A7N4PK20, A0A7N4PRA8
    Related
    ENSSHAP00000036027.1, ENSSHAT00000034852.1
    Conserved Domains (5) summary
    TIGR00864
    Location:503 → 564
    PCC; polycystin cation channel protein
    sd00031
    Location:206 → 218
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:64 → 85
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:16 → 254
    internalin_A; class 1 internalin InlA
    pfam13855
    Location:403 → 460
    LRR_8; Leucine rich repeat

  4. XM_031944410.1 → XP_031800270.1  SLIT and NTRK-like protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A7N4PK20
    Conserved Domains (5) summary
    TIGR00864
    Location:566 → 627
    PCC; polycystin cation channel protein
    sd00031
    Location:269 → 281
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:127 → 148
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:79 → 317
    internalin_A; class 1 internalin InlA
    pfam13855
    Location:466 → 523
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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