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RBM22 RNA binding motif protein 22 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100913563, updated on 8-Mar-2024

Summary

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Gene symbol
RBM22
Gene description
RNA binding motif protein 22
See related
Ensembl:ENSSHAG00000017734
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 2 NC_045427.1 (382570717..382589700)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 1 Unlocalized Scaffold NW_003816613.1 (2939538..2959270)

Chromosome 2 - NC_045427.1Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 3 Neighboring gene dynactin subunit 4 Neighboring gene myozenin 3 Neighboring gene synaptopodin Neighboring gene treacle ribosome biogenesis factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 1 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor RBM22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045427.1 Reference mSarHar1.11 Primary Assembly

    Range
    382570717..382589700
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003756713.4 → XP_003756761.2  pre-mRNA-splicing factor RBM22

    UniProtKB/TrEMBL
    G3WZQ9
    Related
    ENSSHAP00000020914.2, ENSSHAT00000021083.2
    Conserved Domains (2) summary
    smart00356
    Location:159 → 185
    ZnF_C3H1; zinc finger
    cd12224
    Location:231 → 304
    RRM_RBM22; RNA recognition motif (RRM) found in Pre-mRNA-splicing factor RBM22 and similar proteins
Nucleotide Protein
Heading Accession and Version

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