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LOC100830327 zinc finger protein CONSTANS-LIKE 9 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100830327, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100830327
Gene description
zinc finger protein CONSTANS-LIKE 9
Locus tag
BRADI_3g56490v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (56105616..56111295, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (56401304..56406931, complement)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene 25S rRNA (cytosine-C(5))-methyltransferase nop2 Neighboring gene nucleotide-sugar uncharacterized transporter 2 Neighboring gene DNA-directed RNA polymerases IV and V subunit 4 Neighboring gene probable glycosyltransferase 7 Neighboring gene enhancer of mRNA-decapping protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein CONSTANS-LIKE 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    56105616..56111295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003570426.4 → XP_003570474.1  zinc finger protein CONSTANS-LIKE 9

    UniProtKB/TrEMBL
    I1IEC4
    Conserved Domains (3) summary
    smart00336
    Location:4 → 47
    BBOX; B-Box-type zinc finger
    cd00021
    Location:47 → 90
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    pfam06203
    Location:358 → 379
    CCT; CCT motif
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases