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    Tmar_2227 trigger factor [ Thermaerobacter marianensis DSM 12885 ]

    Gene ID: 10082616, updated on 17-Oct-2012
    Gene symbol
    Tmar_2227
    Gene description
    trigger factor
    Locus tag
    Tmar_2227
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Thermaerobacter marianensis DSM 12885 (strain: DSM 12885, culture-collection: DSM:12885)
    Lineage
    Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter
    Location :
    other: 1998, country: Pacific Ocean, isolation source: mud from the Challenger Deep in the Mariana Trench at a depth of 10897 m
    Sequence :
    NC_014831.1 (2686157..2687548, complement)

    NC_014831.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent Clp protease ATP-binding subunit ClpX Neighboring gene ATP-dependent Clp protease proteolytic subunit ClpP Neighboring gene tRNA Neighboring gene tRNA

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Complete genome sequence of Thermaerobacter marianensis type strain (7p75a). Han C, et al. Stand Genomic Sci, 2010 Dec 15. PMID 21304738.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    trigger factor
    YP_004103033.1
    • COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)~InterPro IPR005215: IPR001179: IPR008881: IPR008880~KEGG: pth:PTH_0803 trigger factor~PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type~SPTR: Trigger factor;~TIGRFAM: trigger factor~PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus~TIGRFAM: trigger factor

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_014831.1

      Range
      2686157..2687548, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_004103033.1 trigger factor [Thermaerobacter marianensis DSM 12885]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E6SKT3
      Conserved Domains (3) summary
      PRK01490
      Location:1 – 424
      Blast Score: 973
      tig; trigger factor; Provisional
      pfam00254
      Location:157 – 241
      Blast Score: 139
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
      pfam05698
      Location:264 – 424
      Blast Score: 261
      Trigger_C; Bacterial trigger factor protein (TF) C-terminus
    Nucleotide Protein
    Heading Accession and Version
    genomic CP002344.1 ADU52306.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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