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tcf7l1b transcription factor 7 like 1b [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100820729, updated on 8-Mar-2024

Summary

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Gene symbol
tcf7l1b
Gene description
transcription factor 7 like 1b
See related
EnsemblRapid:ENSORLG00000011813
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
tcf7l1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 9 NC_019867.2 (17486154..17516555)
102 previous assembly ASM31367v1 (GCF_000313675.1) 9 NC_019867.1 (17273316..17303045)

Chromosome 9 - NC_019867.2Genomic Context describing neighboring genes Neighboring gene drebrin-like b Neighboring gene ubiquitin-conjugating enzyme E2D 4 (putative) Neighboring gene dual specificity protein phosphatase 18-like Neighboring gene uncharacterized LOC105354757 Neighboring gene trans-golgi network protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of pluripotency genes in the fish medaka. Wang D, et al. Int J Biol Sci, 2011 Apr 15. PMID 21547061, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in generation of neurons IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of beta-catenin-TCF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor 7-like 1-B; transcription factor 7-like 1
Names
transcription factor 7 like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001252248.1 → NP_001239177.1  transcription factor 7-like 1-B

    See identical proteins and their annotated locations for NP_001239177.1

    Status: PROVISIONAL

    Source sequence(s)
    HQ705658
    UniProtKB/TrEMBL
    A0A3P9JPJ2, A0A3P9K7S2, F8T0U5
    Related
    ENSORLP00000014809.3, ENSORLT00000014810.3
    Conserved Domains (2) summary
    cd01388
    Location:330 → 401
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam08347
    Location:1 → 234
    CTNNB1_binding; N-terminal CTNNB1 binding

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019867.2 Reference ASM223467v1 Primary Assembly

    Range
    17486154..17516555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020705586.2 → XP_020561245.1  transcription factor 7-like 1 isoform X2

    Related
    ENSORLP00000072347.1, ENSORLT00000087700.1
    Conserved Domains (2) summary
    cd01388
    Location:330 → 401
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam08347
    Location:17 → 234
    CTNNB1_binding; N-terminal CTNNB1 binding

  2. XM_011479088.3 → XP_011477390.1  transcription factor 7-like 1 isoform X1

    UniProtKB/TrEMBL
    A0A3P9JPJ2, A0A3P9K7S2, H2M8J2
    Related
    ENSORLP00000066271.1, ENSORLT00000056972.1
    Conserved Domains (3) summary
    COG5648
    Location:284 → 428
    NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
    cd01388
    Location:329 → 400
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam08347
    Location:1 → 234
    CTNNB1_binding; N-terminal CTNNB1 binding
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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