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Plxnd1 plexin D1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100773048, updated on 8-Mar-2024

Summary

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Gene symbol
Plxnd1
Gene description
plexin D1
Locus tag
I79_015019
See related
Ensembl:ENSCGRG00015004847
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Also known as
Plexin-D1
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Plxnd1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
36
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614360.1 (415466..454480, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 8 NC_048601.1 (28871282..28911531)

NW_003614360.1Genomic Context describing neighboring genes Neighboring gene histone H1.8 Neighboring gene rhodopsin Neighboring gene transcription elongation factor A protein-like 9 Neighboring gene transmembrane and coiled-coil domain family 1 Neighboring gene uncharacterized LOC118239976

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endothelial cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of semaphorin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plexin-D1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614360.1 Reference CriGri_1.0 Primary Assembly

    Range
    415466..454480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003507356.4 → XP_003507404.3  plexin-D1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2LKE5
    Conserved Domains (8) summary
    cd11247
    Location:51 → 549
    Sema_plexin_D1; The Sema domain, a protein interacting module, of Plexin D1
    smart00423
    Location:713 → 755
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd01179
    Location:983 → 1069
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:893 → 981
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1071 → 1174
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:551 → 603
    PSI; Plexin repeat
    pfam08337
    Location:1345 → 1888
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:629 → 702
    TIG_plexin; TIG domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048601.1 Alternate CriGri-PICRH-1.0

    Range
    28871282..28911531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027429191.2 → XP_027284992.1  plexin-D1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2LKE5, A0A9J7GFQ3
    Related
    ENSCGRP00015006272.1, ENSCGRT00015007728.2
Nucleotide Protein Strain
Heading Accession and Version

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