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Chd5 chromodomain helicase DNA binding protein 5 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100766055, updated on 8-Mar-2024

Summary

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Gene symbol
Chd5
Gene description
chromodomain helicase DNA binding protein 5
Locus tag
I79_021417
See related
Ensembl:ENSCGRG00015010086
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
45
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003615517.1 (140300..186562, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (3971109..4017962, complement)

NW_003615517.1Genomic Context describing neighboring genes Neighboring gene nephrocystin-4 Neighboring gene potassium voltage-gated channel subfamily A regulatory beta subunit 2 Neighboring gene ribosomal protein L22 Neighboring gene ring finger protein 207

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 5
Names
Chromodomain-helicase-DNA-binding protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003615517.1 Reference CriGri_1.0 Primary Assembly

    Range
    140300..186562 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016980732.2 → XP_016836221.1  chromodomain-helicase-DNA-binding protein 5 isoform X2

  2. XM_007653064.3 → XP_007651254.1  chromodomain-helicase-DNA-binding protein 5 isoform X3

    Conserved Domains (12) summary
    smart00298
    Location:448 → 528
    CHROMO; Chromatin organization modifier domain
    COG0513
    Location:1003 → 1232
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00046
    Location:702 → 860
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd15531
    Location:327 → 369
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:400 → 442
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    pfam00176
    Location:685 → 981
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1005 → 1120
    Helicase_C; Helicase conserved C-terminal domain
    pfam00385
    Location:576 → 624
    Chromo; Chromo (CHRromatin Organization MOdifier) domain
    pfam06461
    Location:1370 → 1510
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1280 → 1340
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:132 → 181
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1710 → 1881
    CHDCT2; CHDCT2 (NUC038) domain

  3. XM_016980731.2 → XP_016836220.1  chromodomain-helicase-DNA-binding protein 5 isoform X1

  4. XM_035436932.1 → XP_035292823.1  chromodomain-helicase-DNA-binding protein 5 isoform X5

    Conserved Domains (10) summary
    PLN03142
    Location:561 → 1077
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK13108
    Location:1398 → 1548
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd15531
    Location:208 → 250
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:281 → 323
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:452 → 505
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:328 → 407
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    pfam06461
    Location:1254 → 1394
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1161 → 1214
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:8 → 63
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1594 → 1720
    CHDCT2; CHDCT2 (NUC038) domain

  5. XM_035436935.1 → XP_035292826.1  chromodomain-helicase-DNA-binding protein 5 isoform X12

    Conserved Domains (7) summary
    PLN03142
    Location:303 → 819
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK13108
    Location:1140 → 1290
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd18662
    Location:194 → 247
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:70 → 149
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    pfam06461
    Location:996 → 1136
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:903 → 956
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08074
    Location:1336 → 1462
    CHDCT2; CHDCT2 (NUC038) domain

  6. XM_035436933.1 → XP_035292824.1  chromodomain-helicase-DNA-binding protein 5 isoform X8

    Conserved Domains (10) summary
    PLN03142
    Location:680 → 1196
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK13108
    Location:1514 → 1664
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd15531
    Location:327 → 369
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:400 → 442
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:571 → 624
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:447 → 526
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    pfam06461
    Location:1370 → 1510
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1280 → 1333
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:127 → 182
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1710 → 1836
    CHDCT2; CHDCT2 (NUC038) domain

  7. XM_035436934.1 → XP_035292825.1  chromodomain-helicase-DNA-binding protein 5 isoform X9

    Conserved Domains (10) summary
    PLN03142
    Location:680 → 1196
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK13108
    Location:1517 → 1667
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd15531
    Location:327 → 369
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:400 → 442
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:571 → 624
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:447 → 526
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    pfam06461
    Location:1373 → 1513
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1280 → 1333
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:127 → 182
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1713 → 1839
    CHDCT2; CHDCT2 (NUC038) domain

  8. XM_027384609.2 → XP_027240410.1  chromodomain-helicase-DNA-binding protein 5 isoform X7

  9. XM_035436931.1 → XP_035292822.1  chromodomain-helicase-DNA-binding protein 5 isoform X4

    Conserved Domains (10) summary
    PLN03142
    Location:680 → 1196
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK13108
    Location:1517 → 1667
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd15531
    Location:327 → 369
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:400 → 442
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:571 → 624
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:447 → 526
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    pfam06461
    Location:1373 → 1513
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1280 → 1333
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:127 → 182
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1713 → 1839
    CHDCT2; CHDCT2 (NUC038) domain

  10. XM_016980735.3 → XP_016836224.1  chromodomain-helicase-DNA-binding protein 5 isoform X6

  11. XM_016980737.3 → XP_016836226.1  chromodomain-helicase-DNA-binding protein 5 isoform X10

  12. XM_016980736.2 → XP_016836225.1  chromodomain-helicase-DNA-binding protein 5 isoform X11

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    3971109..4017962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027398381.2 → XP_027254182.1  chromodomain-helicase-DNA-binding protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JBA6

  2. XM_027398382.2 → XP_027254183.1  chromodomain-helicase-DNA-binding protein 5 isoform X3

    UniProtKB/TrEMBL
    A0A9J7FBM6
    Related
    ENSCGRP00015057178.1, ENSCGRT00015068270.1

  3. XM_027398380.2 → XP_027254181.1  chromodomain-helicase-DNA-binding protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A9J7F909

  4. XM_035439348.1 → XP_035295239.1  chromodomain-helicase-DNA-binding protein 5 isoform X5

    UniProtKB/TrEMBL
    A0A9J7GNP4
    Conserved Domains (10) summary
    PLN03142
    Location:561 → 1077
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK13108
    Location:1398 → 1548
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd15531
    Location:208 → 250
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:281 → 323
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:452 → 505
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:328 → 407
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    pfam06461
    Location:1254 → 1394
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1161 → 1214
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:8 → 63
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1594 → 1720
    CHDCT2; CHDCT2 (NUC038) domain

  5. XM_035439351.1 → XP_035295242.1  chromodomain-helicase-DNA-binding protein 5 isoform X12

    UniProtKB/TrEMBL
    A0A9J7K104
    Conserved Domains (7) summary
    PLN03142
    Location:303 → 819
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK13108
    Location:1140 → 1290
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd18662
    Location:194 → 247
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:70 → 149
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    pfam06461
    Location:996 → 1136
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:903 → 956
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08074
    Location:1336 → 1462
    CHDCT2; CHDCT2 (NUC038) domain

  6. XM_035439349.1 → XP_035295240.1  chromodomain-helicase-DNA-binding protein 5 isoform X8

    UniProtKB/TrEMBL
    A0A9J7GT30
    Related
    ENSCGRP00015013690.2, ENSCGRT00015016771.2
    Conserved Domains (10) summary
    PLN03142
    Location:680 → 1196
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK13108
    Location:1514 → 1664
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd15531
    Location:327 → 369
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:400 → 442
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:571 → 624
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:447 → 526
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    pfam06461
    Location:1370 → 1510
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1280 → 1333
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:127 → 182
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1710 → 1836
    CHDCT2; CHDCT2 (NUC038) domain

  7. XM_035439350.1 → XP_035295241.1  chromodomain-helicase-DNA-binding protein 5 isoform X9

    UniProtKB/TrEMBL
    A0A9J7GPI7
    Related
    ENSCGRP00015013390.2, ENSCGRT00015016378.2
    Conserved Domains (10) summary
    PLN03142
    Location:680 → 1196
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK13108
    Location:1517 → 1667
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd15531
    Location:327 → 369
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:400 → 442
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:571 → 624
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:447 → 526
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    pfam06461
    Location:1373 → 1513
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1280 → 1333
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:127 → 182
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1713 → 1839
    CHDCT2; CHDCT2 (NUC038) domain

  8. XM_027398385.2 → XP_027254186.1  chromodomain-helicase-DNA-binding protein 5 isoform X7

    UniProtKB/TrEMBL
    A0A9J7JDE9

  9. XM_035439347.1 → XP_035295238.1  chromodomain-helicase-DNA-binding protein 5 isoform X4

    UniProtKB/TrEMBL
    A0A9J7GQZ4
    Conserved Domains (10) summary
    PLN03142
    Location:680 → 1196
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PRK13108
    Location:1517 → 1667
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd15531
    Location:327 → 369
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:400 → 442
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:571 → 624
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:447 → 526
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    pfam06461
    Location:1373 → 1513
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1280 → 1333
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:127 → 182
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1713 → 1839
    CHDCT2; CHDCT2 (NUC038) domain

  10. XM_027398384.2 → XP_027254185.1  chromodomain-helicase-DNA-binding protein 5 isoform X6

    UniProtKB/TrEMBL
    A0A9J7J7Z8
    Related
    ENSCGRP00015013377.2, ENSCGRT00015016363.2

  11. XM_027398386.2 → XP_027254187.1  chromodomain-helicase-DNA-binding protein 5 isoform X10

    UniProtKB/TrEMBL
    A0A9J7JDB2

  12. XM_027398387.2 → XP_027254188.1  chromodomain-helicase-DNA-binding protein 5 isoform X11

    UniProtKB/TrEMBL
    A0A9J7F9S8
    Related
    ENSCGRP00015013358.2, ENSCGRT00015016343.2
Nucleotide Protein Strain
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