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Zscan29 zinc finger and SCAN domain containing 29 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100755445, updated on 8-Mar-2024

Summary

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Gene symbol
Zscan29
Gene description
zinc finger and SCAN domain containing 29
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613677.1 (1147902..1161792)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 6 NC_048599.1 (57262918..57267072)

NW_003613677.1Genomic Context describing neighboring genes Neighboring gene tumor protein p53 binding protein 1 Neighboring gene tubulin gamma complex component 4 Neighboring gene adenosine deaminase like Neighboring gene leucine carboxyl methyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: zinc finger and SCAN domain-containing protein 29; zinc finger and SCAN domain-containing protein 29
Names
Zinc finger and SCAN domain-containing protein 29

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613677.1 Reference CriGri_1.0 Primary Assembly

    Range
    1147902..1161792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007621739.4 → XP_007619929.1  zinc finger and SCAN domain-containing protein 29 isoform X1

    See identical proteins and their annotated locations for XP_007619929.1

    UniProtKB/TrEMBL
    G3H0V4
    Conserved Domains (7) summary
    smart00431
    Location:13 → 123
    SCAN; leucine rich region
    COG5048
    Location:667 → 827
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:671 → 691
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:669 → 691
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:13 → 101
    SCAN; SCAN domain
    pfam13465
    Location:739 → 764
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:403 → 484
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  2. XM_007621745.4 → XP_007619935.1  zinc finger and SCAN domain-containing protein 29 isoform X2

    See identical proteins and their annotated locations for XP_007619935.1

    Conserved Domains (5) summary
    COG5048
    Location:642 → 802
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:646 → 666
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:644 → 666
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:714 → 739
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:378 → 459
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048599.1 Alternate CriGri-PICRH-1.0

    Range
    57262918..57267072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035446001.1 → XP_035301892.1  LOW QUALITY PROTEIN: zinc finger and SCAN domain-containing protein 29 isoform X3

    UniProtKB/TrEMBL
    A0A9J7GZB6
    Conserved Domains (1) summary
    pfam13837
    Location:162 → 243
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein Strain
Heading Accession and Version

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