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GCM2 glial cells missing transcription factor 2 [ Sus scrofa (pig) ]

Gene ID: 100738494, updated on 8-Mar-2024

Summary

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Official Symbol
GCM2provided by VGNC
Official Full Name
glial cells missing transcription factor 2provided by VGNC
Primary source
VGNC:VGNC:88389
See related
Ensembl:ENSSSCG00000035562
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (7563880..7570628, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (7925756..7928086, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene transmembrane protein 14C Neighboring gene PAK1 interacting protein 1 Neighboring gene male germ cell associated kinase Neighboring gene synaptonemal complex protein 2 like Neighboring gene ELOVL fatty acid elongase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gliogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chorion-specific transcription factor GCMb
Names
glial cells missing homolog 2
glial cells missing-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    7563880..7570628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021100173.1 → XP_020955832.1  chorion-specific transcription factor GCMb

    UniProtKB/TrEMBL
    A0A287AB85
    Related
    ENSSSCP00000041227.2, ENSSSCT00000037497.2
    Conserved Domains (1) summary
    pfam03615
    Location:35 → 172
    GCM; GCM motif protein
Nucleotide Protein
Heading Accession and Version

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