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TCP19 TCP transcription factor 19 [ Solanum lycopersicum (tomato) ]

Gene ID: 100736522, updated on 9-Nov-2023

Summary

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Gene symbol
TCP19
Gene description
TCP transcription factor 19
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See TCP19 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
1
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 9 NC_015446.3 (1504943..1505967, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 9 NC_015446.2 (1504908..1505932, complement)

Chromosome 9 - NC_015446.3Genomic Context describing neighboring genes Neighboring gene receptor-like cytoplasmic kinase PCRK1-like Neighboring gene OTU domain-containing protein DDB_G0284757 Neighboring gene RNA polymerase sigma factor sigF, chloroplastic Neighboring gene UDP-glycosyltransferase 86A1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification, cloning and characterization of the tomato TCP transcription factor family. Parapunova V, et al. BMC Plant Biol, 2014 Jun 6. PMID 24903607, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TCP transcription factor 19

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246892.3 → NP_001233821.2  TCP transcription factor 19

    Status: VALIDATED

    Source sequence(s)
    AEKE03003145
    UniProtKB/TrEMBL
    A0A3Q7HYI7, G3BGV9
    Conserved Domains (1) summary
    pfam03634
    Location:44 → 103
    TCP; TCP family transcription factor

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015446.3 Reference SL3.0 Primary Assembly

    Range
    1504943..1505967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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