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Trip13 thyroid hormone receptor interactor 13 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100733277, updated on 8-Mar-2024

Summary

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Gene symbol
Trip13
Gene description
thyroid hormone receptor interactor 13
See related
Ensembl:ENSCPOG00000004081
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947494.1 (782886..799880)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176269.1 (1536044..1552814, complement)

NW_026947494.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111753583 Neighboring gene palmitoyltransferase ZDHHC11 Neighboring gene bromodomain containing 9 Neighboring gene NKD inhibitor of WNT signaling pathway 2 Neighboring gene solute carrier family 12 member 7 Neighboring gene solute carrier family 6 member 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in meiotic recombination checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in reciprocal meiotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pachytene checkpoint protein 2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947494.1 Reference mCavPor4.1

    Range
    782886..799880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063257914.1 → XP_063113984.1  pachytene checkpoint protein 2 homolog isoform X1

  2. XM_003462097.5 → XP_003462145.3  pachytene checkpoint protein 2 homolog isoform X2

    UniProtKB/TrEMBL
    H0V2C6
    Related
    ENSCPOP00000003682.2
    Conserved Domains (2) summary
    smart00382
    Location:172 → 322
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:175 → 320
    AAA; ATPase family associated with various cellular activities (AAA)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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