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Ccdc40 coiled-coil domain 40 molecular ruler complex subunit [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100733015, updated on 8-Mar-2024

Summary

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Gene symbol
Ccdc40
Gene description
coiled-coil domain 40 molecular ruler complex subunit
See related
Ensembl:ENSCPOG00000006970
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947515.1 (28513254..28567687)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176343.1 (4736582..4790494)

NW_026947515.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134474344 Neighboring gene TBC1 domain family member 16 Neighboring gene uncharacterized LOC134474352 Neighboring gene alpha glucosidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in epithelial cilium movement involved in determination of left/right asymmetry IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart looping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 40
Names
coiled-coil domain containing 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947515.1 Reference mCavPor4.1

    Range
    28513254..28567687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013147134.3 → XP_013002588.1  coiled-coil domain-containing protein 40 isoform X1

    UniProtKB/TrEMBL
    H0V911
    Conserved Domains (2) summary
    TIGR02168
    Location:309 → 1054
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam08647
    Location:790 → 888
    BRE1; BRE1 E3 ubiquitin ligase

  2. XM_013147135.3 → XP_013002589.1  coiled-coil domain-containing protein 40 isoform X2

    UniProtKB/TrEMBL
    H0V911
    Related
    ENSCPOP00000006286.3
    Conserved Domains (3) summary
    PHA03169
    Location:21 → 238
    PHA03169; hypothetical protein; Provisional
    TIGR02168
    Location:304 → 1049
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam08647
    Location:785 → 883
    BRE1; BRE1 E3 ubiquitin ligase
Nucleotide Protein
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