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Ttc12 tetratricopeptide repeat domain 12 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100714221, updated on 8-Mar-2024

Summary

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Gene symbol
Ttc12
Gene description
tetratricopeptide repeat domain 12
See related
Ensembl:ENSCPOG00000004685
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Ttc12 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947492.1 (5687559..5745036)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176400.1 (34455168..34512619, complement)

NW_026947492.1Genomic Context describing neighboring genes Neighboring gene neural cell adhesion molecule 1 Neighboring gene uncharacterized LOC134477605 Neighboring gene uncharacterized LOC134477606 Neighboring gene uncharacterized LOC106028268 Neighboring gene ankyrin repeat and kinase domain containing 1 Neighboring gene dopamine receptor D2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonemal dynein complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sperm axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947492.1 Reference mCavPor4.1

    Range
    5687559..5745036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023566224.2 → XP_023421992.1  tetratricopeptide repeat protein 12 isoform X1

    Conserved Domains (2) summary
    sd00006
    Location:106 → 134
    TPR; TPR repeat [structural motif]
    cl26005
    Location:105 → 255
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional

  2. XM_003472687.5 → XP_003472735.1  tetratricopeptide repeat protein 12 isoform X2

    See identical proteins and their annotated locations for XP_003472735.1

    UniProtKB/TrEMBL
    H0V3P9
    Related
    ENSCPOP00000004217.3
    Conserved Domains (5) summary
    cd00020
    Location:526 → 631
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00006
    Location:106 → 134
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:143 → 173
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:106 → 171
    TPR_11; TPR repeat
    sd00043
    Location:555 → 591
    ARM; armadillo repeat [structural motif]

  3. XM_063255778.1 → XP_063111848.1  tetratricopeptide repeat protein 12 isoform X1

Nucleotide Protein
Heading Accession and Version

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