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Sf3a1 splicing factor 3a subunit 1 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100712689, updated on 8-Mar-2024

Summary

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Gene symbol
Sf3a1
Gene description
splicing factor 3a subunit 1
See related
Ensembl:ENSCPOG00000014589
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947499.1 (23980170..23998918)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176415.1 (12789174..12807894)

NW_026947499.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene ring finger protein 215 Neighboring gene coiled-coil domain containing 157 Neighboring gene TBC1 domain family member 10A Neighboring gene cytosolic arginine sensor for mTORC1 subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3A subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947499.1 Reference mCavPor4.1

    Range
    23980170..23998918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003478319.4 → XP_003478367.1  splicing factor 3A subunit 1

    UniProtKB/TrEMBL
    H0VRD6
    Related
    ENSCPOP00000013144.2
    Conserved Domains (5) summary
    cd01800
    Location:718 → 793
    SF3a120_C; Ubiquitin-like domain of Mammalian splicing factor SF3a_120
    smart00648
    Location:50 → 103
    SWAP; Suppressor-of-White-APricot splicing regulator
    smart00213
    Location:718 → 786
    UBQ; Ubiquitin homologues
    pfam01805
    Location:165 → 215
    Surp; Surp module
    pfam12230
    Location:229 → 471
    PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein
Nucleotide Protein
Heading Accession and Version

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