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focad focadhesin [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100711980, updated on 8-Mar-2024

Summary

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Gene symbol
focad
Gene description
focadhesin
See related
Ensembl:ENSONIG00000019846
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Ubiquitous expression in testis (RPKM 17.6), ovary (RPKM 8.9) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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See focad in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
45
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG3 NC_031967.2 (75886..110913)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG3a NC_031967.1 (10259761..10294753)

Linkage Group LG3 - NC_031967.2Genomic Context describing neighboring genes Neighboring gene NLR family CARD domain-containing protein 3-like Neighboring gene uncharacterized LOC112842747 Neighboring gene uncharacterized LOC109196150 Neighboring gene 3-hydroxyacyl-CoA dehydratase 4 Neighboring gene linkage group 3 C4orf54 homolog Neighboring gene tRNA methyltransferase 10A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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Related articles in PubMed

  1. Transcriptome profiling and digital gene expression analysis of Nile tilapia (Oreochromis niloticus) infected by Streptococcus agalactiae. Zhang R, et al. Mol Biol Rep, 2013 Oct. PMID 24068429

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
focadhesin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031967.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    75886..110913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019349288.2 → XP_019204833.1  focadhesin isoform X1

    UniProtKB/TrEMBL
    A0A669E8B8
    Conserved Domains (2) summary
    pfam11229
    Location:1221 → 1809
    Focadhesin; Focadhesin
    pfam12530
    Location:500 → 718
    DUF3730; Protein of unknown function (DUF3730)

  2. XM_019349289.2 → XP_019204834.1  focadhesin isoform X2

    UniProtKB/TrEMBL
    A0A669E8B8, I3KV35
    Related
    ENSONIP00000024981.2, ENSONIT00000025002.2

  3. XM_019349294.2 → XP_019204839.1  focadhesin isoform X4

    UniProtKB/TrEMBL
    A0A669CN44

  4. XM_025899712.1 → XP_025755497.1  focadhesin isoform X1

    UniProtKB/TrEMBL
    A0A669E8B8
    Related
    ENSONIP00000029378.1, ENSONIT00000057313.1
    Conserved Domains (2) summary
    pfam11229
    Location:1221 → 1809
    Focadhesin; Focadhesin
    pfam12530
    Location:500 → 718
    DUF3730; Protein of unknown function (DUF3730)

  5. XM_025899719.1 → XP_025755504.1  focadhesin isoform X3

    UniProtKB/TrEMBL
    A0A669CN44
    Related
    ENSONIP00000033050.1, ENSONIT00000071679.1
    Conserved Domains (2) summary
    pfam11229
    Location:1024 → 1612
    Focadhesin
    pfam12530
    Location:303 → 521
    DUF3730; Protein of unknown function (DUF3730)
Nucleotide Protein
Heading Accession and Version

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