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gtf2h4 general transcription factor IIH, polypeptide 4 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100711889, updated on 8-Mar-2024

Summary

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Gene symbol
gtf2h4
Gene description
general transcription factor IIH, polypeptide 4
See related
Ensembl:ENSONIG00000004743
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Ubiquitous expression in ovary (RPKM 31.7), testis (RPKM 18.6) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG22
Exon count:
14
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG22 NC_031985.2 (37820454..37850399, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG22 NC_031985.1 (3485938..3514328)

Linkage Group LG22 - NC_031985.2Genomic Context describing neighboring genes Neighboring gene 28S ribosomal RNA Neighboring gene SH3-binding domain protein 5-like, b Neighboring gene RNA polymerase I subunit H Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B Neighboring gene alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIH core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription factor IIH subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031985.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    37820454..37850399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005463611.4 → XP_005463668.1  general transcription factor IIH subunit 4

    See identical proteins and their annotated locations for XP_005463668.1

    UniProtKB/TrEMBL
    A0A669DKK7, A0A669DR79
    Related
    ENSONIP00000063057.1, ENSONIT00000070849.1
    Conserved Domains (1) summary
    cl04289
    Location:11 → 457
    Tfb2; Transcription factor Tfb2
Nucleotide Protein
Heading Accession and Version

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