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pus1 pseudouridine synthase 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100710137, updated on 8-Mar-2024

Summary

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Gene symbol
pus1
Gene description
pseudouridine synthase 1
See related
Ensembl:ENSONIG00000003803
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in ovary (RPKM 23.6), testis (RPKM 14.1) and 8 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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See pus1 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
6
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG7 NC_031972.2 (24756721..24760485, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG7 NC_031972.1 (24855586..24859487, complement)

Linkage Group LG7 - NC_031972.2Genomic Context describing neighboring genes Neighboring gene RIMS binding protein 2a Neighboring gene nucleolar complex associated 4 homolog Neighboring gene ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2b Neighboring gene BCR activator of RhoGEF and GTPase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA pseudouridine synthase A
Names
pseudouridylate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031972.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    24756721..24760485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003444341.5 → XP_003444389.1  tRNA pseudouridine synthase A

    UniProtKB/TrEMBL
    A0A669CPN0, I3J7E3
    Related
    ENSONIP00000004783.2, ENSONIT00000004786.2
    Conserved Domains (2) summary
    cd02568
    Location:84 → 337
    PseudoU_synth_PUS1_PUS2; Pseudouridine synthase, PUS1/ PUS2 like
    COG0101
    Location:80 → 360
    TruA; tRNA U38,U39,U40 pseudouridine synthase TruA [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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