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polr2a RNA polymerase II subunit A [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100709712, updated on 8-Mar-2024

Summary

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Gene symbol
polr2a
Gene description
RNA polymerase II subunit A
See related
Ensembl:ENSONIG00000009231
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in blood (RPKM 41.6), testis (RPKM 35.2) and 8 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG3
Exon count:
29
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG3 NC_031967.2 (17646083..17658692)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG3b NC_031968.1 (13170138..13182746, complement)

Linkage Group LG3 - NC_031967.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112846210 Neighboring gene zinc finger and BTB domain containing 4 Neighboring gene uncharacterized LOC102080162 Neighboring gene transmembrane protein 272-like Neighboring gene transmembrane protein 272-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
Names
polymerase (RNA) II (DNA directed) polypeptide A, 220kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031967.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    17646083..17658692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003449332.5 → XP_003449380.2  LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1

    UniProtKB/TrEMBL
    I3JRW6
    Related
    ENSONIP00000070707.1, ENSONIT00000044476.1
Nucleotide Protein
Heading Accession and Version

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