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ncam2 neural cell adhesion molecule 2 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100709549, updated on 21-Dec-2023

Summary

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Gene symbol
ncam2
Gene description
neural cell adhesion molecule 2
See related
Ensembl:ENSONIG00000001866
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in brain (RPKM 5.0), whole embryo (RPKM 1.7) and 4 other tissues See more
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Genomic context

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Location:
chromosome: LG23
Exon count:
18
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG23 NC_031986.2 (15150249..15522269, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG23 NC_031986.1 (29215983..29587982, complement)

Linkage Group LG23 - NC_031986.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100709818 Neighboring gene uncharacterized LOC109196779 Neighboring gene uncharacterized LOC109196976 Neighboring gene uncharacterized LOC109196978

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031986.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    15150249..15522269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005460775.4 → XP_005460832.1  neural cell adhesion molecule 2 isoform X2

    UniProtKB/TrEMBL
    A0A669F845
    Related
    ENSONIP00000070933.1, ENSONIT00000086735.1
    Conserved Domains (6) summary
    smart00408
    Location:416 → 484
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:415 → 492
    IG_like; Immunoglobulin like
    cd00063
    Location:498 → 590
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:214 → 300
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:620 → 679
    fn3; Fibronectin type III domain
    cl11960
    Location:302 → 399
    Ig; Immunoglobulin domain

  2. XM_005460774.4 → XP_005460831.1  neural cell adhesion molecule 2 isoform X1

    UniProtKB/TrEMBL
    A0A669F845
    Related
    ENSONIP00000080847.1, ENSONIT00000044080.1
    Conserved Domains (5) summary
    cd00063
    Location:498 → 590
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:619 → 679
    fn3; Fibronectin type III domain
    pfam13927
    Location:403 → 481
    Ig_3; Immunoglobulin domain
    cd00096
    Location:302 → 307
    Ig; Ig strand A [structural motif]
    cl11960
    Location:302 → 399
    Ig; Immunoglobulin domain

  3. XM_019352139.2 → XP_019207684.1  neural cell adhesion molecule 2 isoform X3

    UniProtKB/TrEMBL
    I3J0D8
    Related
    ENSONIP00000054118.1, ENSONIT00000073845.1
Nucleotide Protein
Heading Accession and Version

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