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bicc1 BicC family RNA binding protein 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100709389, updated on 21-Dec-2023

Summary

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Gene symbol
bicc1
Gene description
BicC family RNA binding protein 1
See related
Ensembl:ENSONIG00000000620
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in testis (RPKM 12.5), skin (RPKM 4.5) and 7 other tissues See more
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Genomic context

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Location:
chromosome: LG13
Exon count:
21
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG13 NC_031978.2 (13113632..13171298)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG13 NC_031978.1 (2437789..2495461, complement)

Linkage Group LG13 - NC_031978.2Genomic Context describing neighboring genes Neighboring gene regulator of G protein signaling 7a Neighboring gene ubiquitin-conjugating enzyme E2 D4 Neighboring gene phytanoyl-CoA 2-hydroxylase interacting protein-like b Neighboring gene protein FAM13A Neighboring gene solute carrier family 16 member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein bicaudal C homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031978.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    13113632..13171298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003438406.5 → XP_003438454.1  protein bicaudal C homolog 1

    UniProtKB/TrEMBL
    A0A669DTV9, I3IVZ8
    Related
    ENSONIP00000000788.1, ENSONIT00000000787.2
    Conserved Domains (5) summary
    cd09520
    Location:870 → 934
    SAM_BICC1; SAM domain of BICC1 (bicaudal) subfamily
    pfam03154
    Location:468 → 635
    Atrophin-1; Atrophin-1 family
    cd22420
    Location:47 → 127
    KH-I_BICC1_rpt1; first type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
    cd22421
    Location:132 → 201
    KH-I_BICC1_rpt2; second type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
    cd22422
    Location:281 → 346
    KH-I_BICC1_rpt3; third type I K homology (KH) RNA-binding domain found in protein bicaudal C homolog 1 (BICC1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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