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bend3 BEN domain containing 3 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100709245, updated on 8-Mar-2024

Summary

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Gene symbol
bend3
Gene description
BEN domain containing 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Ubiquitous expression in testis (RPKM 6.5), kidney (RPKM 5.3) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG19
Exon count:
4
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG19 NC_031983.2 (24810381..24815359)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG19 NC_031983.1 (5988749..5993747, complement)

Linkage Group LG19 - NC_031983.2Genomic Context describing neighboring genes Neighboring gene sine oculis binding protein homolog (Drosophila) a Neighboring gene prenyl (decaprenyl) diphosphate synthase, subunit 2 Neighboring gene transmembrane protein 151B Neighboring gene mitochondrial transcription rescue factor 1 Neighboring gene transmembrane protein 151B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rDNA heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BEN domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031983.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    24810381..24815359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003445505.5 → XP_003445553.1  BEN domain-containing protein 3

    UniProtKB/TrEMBL
    I3KTY6
    Conserved Domains (3) summary
    smart01025
    Location:725 → 804
    BEN; The BEN domain is found in diverse animal proteins
    pfam15376
    Location:16 → 88
    DUF4603; Domain of unknown function (DUF4603)
    cl11158
    Location:396 → 463
    BEN; BEN domain
Nucleotide Protein
Heading Accession and Version

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