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aspscr1 ASPSCR1 tether for SLC2A4, UBX domain containing [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100704547, updated on 8-Mar-2024

Summary

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Gene symbol
aspscr1
Gene description
ASPSCR1 tether for SLC2A4, UBX domain containing
See related
Ensembl:ENSONIG00000018780
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in ovary (RPKM 57.5), skeletal muscle (RPKM 27.4) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG6
Exon count:
17
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG6 NC_031971.2 (32691979..32714761, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG6 NC_031971.1 (9174609..9197384)

Linkage Group LG6 - NC_031971.2Genomic Context describing neighboring genes Neighboring gene myeloid-associated differentiation marker-like protein 2 Neighboring gene UDP-glucuronosyltransferase 2A1 Neighboring gene uncharacterized LOC112847112 Neighboring gene notum, palmitoleoyl-protein carboxylesterase b Neighboring gene transmembrane channel-like 6b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tether containing UBX domain for GLUT4
Names
ASPSCR1, UBX domain containing tether for SLC2A4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031971.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    32691979..32714761 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005458508.4 → XP_005458565.1  tether containing UBX domain for GLUT4

    UniProtKB/TrEMBL
    I3KR99
    Related
    ENSONIP00000023644.2, ENSONIT00000023665.2
    Conserved Domains (2) summary
    pfam11470
    Location:11 → 74
    TUG-UBL1; TUG ubiquitin-like domain
    cl00155
    Location:433 → 506
    UBQ; Ubiquitin-like proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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