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tbc1d8 TBC1 domain family member 8 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100703744, updated on 8-Mar-2024

Summary

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Gene symbol
tbc1d8
Gene description
TBC1 domain family member 8
See related
Ensembl:ENSONIG00000017018
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Ubiquitous expression in eye (RPKM 8.8), kidney (RPKM 7.3) and 8 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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See tbc1d8 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
20
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG16 NC_031987.2 (26829039..26849385, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG16 NC_031987.1 (9466288..9486642)

Linkage Group LG16 - NC_031987.2Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like 5A Neighboring gene nebulin Neighboring gene phosducin-like 3 Neighboring gene neuromedin S Neighboring gene uncharacterized LOC112844183

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TBC1 domain family member 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031987.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    26829039..26849385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003454918.5 → XP_003454966.1  TBC1 domain family member 8

    UniProtKB/TrEMBL
    A0A669DZ82, I3KK21
    Related
    ENSONIP00000064126.1, ENSONIT00000049900.1
    Conserved Domains (2) summary
    smart00164
    Location:497 → 703
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cl17171
    Location:156 → 254
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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