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satb2 SATB homeobox 2 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100701863, updated on 8-Mar-2024

Summary

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Gene symbol
satb2
Gene description
SATB homeobox 2
See related
Ensembl:ENSONIG00000013780
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in kidney (RPKM 23.7), whole embryo (RPKM 3.9) and 2 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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See satb2 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
17
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG16 NC_031987.2 (32605483..32669662, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG16 NC_031987.1 (3350137..3414319)

Linkage Group LG16 - NC_031987.2Genomic Context describing neighboring genes Neighboring gene raftlin family member 2 Neighboring gene phospholipase C like 1 Neighboring gene uncharacterized LOC102076564 Neighboring gene DnaJ heat shock protein family (Hsp40) member B11 Neighboring gene TBCC domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein SATB2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031987.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    32605483..32669662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019353176.2 → XP_019208721.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A669AY25, A0A669DNU1

  2. XM_019353178.2 → XP_019208723.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A669AY25, A0A669DNU1
    Related
    ENSONIP00000029312.1, ENSONIT00000047140.1

  3. XM_019353177.1 → XP_019208722.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A669AY25, A0A669DNU1
    Related
    ENSONIP00000027202.1, ENSONIT00000058373.1

  4. XM_019353180.2 → XP_019208725.1  DNA-binding protein SATB2 isoform X3

    UniProtKB/TrEMBL
    A0A669BYW1, A0A669DNU1
    Related
    ENSONIP00000040732.1, ENSONIT00000047025.1

  5. XM_019353179.2 → XP_019208724.1  DNA-binding protein SATB2 isoform X2

    UniProtKB/TrEMBL
    A0A669B421
    Related
    ENSONIP00000017331.2, ENSONIT00000017346.2

  6. XM_019353175.2 → XP_019208720.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A669AY25, A0A669DNU1
Nucleotide Protein
Heading Accession and Version

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